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AT5G12250 - ( TUB6 (BETA-6 TUBULIN) structural constituent of cytoskeleton )

55 Proteins interacs with AT5G12250

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G14960	Predicted interaction prediction two hybrid two hybrid two hybrid Synthetic Rescue interologs mapping Enriched domain pair Co-expression	FSW = 0.2725	Class C: plasma membrane nucleus cytoskeleton	TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0197	Class C: plasma membrane nucleus	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT2G29550	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2980	Class C: plasma membrane nucleus	TUB7 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G20890	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.3024	Class C: plasma membrane nucleus	TUB9 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G62690	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.2947	Class C: plasma membrane nucleus	TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G23860	Predicted Enriched domain pair Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.3141	Class C: plasma membrane nucleus	TUB8 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G44340	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.3529	Class C: plasma membrane nucleus	TUB4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G61650	Predicted Shared biological function Enriched domain pair Phylogenetic profile method	FSW = 0.3105	Class C: plasma membrane cytoskeleton	TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G20010	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6602	Class C: plasma membrane	TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.0111	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0812	Class C: nucleus	HISTONE H4
AT5G67630	Predicted Affinity Capture-MS	FSW = 0.0941	Class C: nucleus	DNA HELICASE PUTATIVE
AT2G31660	Predicted Affinity Capture-MS	FSW = 0.0759	Class C: nucleus	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT5G41370	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0139	Class C: nucleus	XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT3G54610	Predicted Affinity Capture-MS	FSW = 0.0099	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.0110	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G41360	Predicted Phenotypic Enhancement	FSW = 0.0244	Class C: nucleus	XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT5G05620	Predicted Shared biological function Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.2130	Class C: cytoskeleton	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G50010	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement Enriched domain pair	FSW = 0.0820	Class C: cytoskeleton	TUA2 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G35630	Predicted two hybrid Synthetic Rescue Reconstituted Complex interaction prediction	FSW = 0.0929	Class C: cytoskeleton	MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING
AT2G01690	Predicted Synthetic Lethality	FSW = 0.0347	Unknown	BINDING
AT1G75780	Predicted Shared biological function Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2890	Unknown	TUB1 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G64790	Predicted Affinity Capture-MS	FSW = 0.1087	Unknown	BINDING
AT5G03290	Predicted Affinity Capture-MS	FSW = 0.0381	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT1G67120	Predicted Affinity Capture-MS	FSW = 0.1108	Unknown	ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT1G71440	Predicted Synthetic Lethality	FSW = 0.2118	Unknown	PFI (PFIFFERLING)
AT1G17745	Predicted interaction prediction	FSW = 0.0115	Unknown	PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT3G12050	Predicted Affinity Capture-MS	FSW = 0.0870	Unknown	AHA1 DOMAIN-CONTAINING PROTEIN
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0090	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G79750	Predicted Affinity Capture-MS	FSW = 0.0830	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT3G25980	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0797	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT2G46520	Predicted Affinity Capture-MS	FSW = 0.0265	Unknown	CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT3G20050	Predicted Synthetic Lethality	FSW = 0.0273	Unknown	ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G51710	Predicted Synthetic Lethality	FSW = 0.0323	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT2G30410	Predicted interaction prediction Reconstituted Complex two hybrid Reconstituted Complex Reconstituted Complex interologs mapping Synthetic Rescue Affinity Capture-Western	FSW = 0.1558	Unknown	KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT2G33560	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0561	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G44580	Predicted Synthetic Lethality	FSW = 0.0551	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G03110	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0379	Unknown	XPO1B BINDING / PROTEIN TRANSPORTER
AT3G22480	Predicted Synthetic Lethality	FSW = 0.0787	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G26020	Predicted Synthetic Rescue	FSW = 0.0556	Unknown	SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G50960	Predicted two hybrid	FSW = 0.1111	Unknown	PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT5G10260	Predicted Synthetic Lethality	FSW = 0.0078	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT1G29940	Predicted Affinity Capture-MS	FSW = 0.0471	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G29990	Predicted Synthetic Lethality interaction prediction	FSW = 0.0915	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G47290	Predicted Affinity Capture-MS	FSW = 0.0561	Unknown	AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING)
AT2G37420	Predicted Synthetic Rescue	FSW = 0.0094	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0708	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G11830	Predicted Affinity Capture-MS	FSW = 0.0529	Unknown	CHAPERONIN PUTATIVE
AT3G11910	Predicted Affinity Capture-MS	FSW = 0.0342	Unknown	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G19240	Predicted Affinity Capture-MS	FSW = 0.0711	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) VACUOLAR IMPORT AND DEGRADATION VID27-RELATED (INTERPROIPR013863) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DEM PROTEIN-RELATED / DEFECTIVE EMBRYO AND MERISTEMS PROTEIN-RELATED (TAIRAT4G334001) HAS 206 BLAST HITS TO 202 PROTEINS IN 88 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 11 FUNGI - 117 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 40 (SOURCE NCBI BLINK)
AT3G59950	Predicted interaction prediction two hybrid	FSW = 0.0610	Unknown	AUTOPHAGY 4B (APG4B)
AT4G27180	Predicted Reconstituted Complex	FSW = 0.1474	Unknown	ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT5G02880	Predicted Affinity Capture-MS	FSW = 0.0323	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G23290	Predicted Synthetic Lethality	FSW = 0.1152	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G62700	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.2177	Unknown	TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G12250 - ( TUB6 (BETA-6 TUBULIN) structural constituent of cytoskeleton )

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Fasta sequences:

Quick help

FSW

C3

PEP

How to cite