Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12980 - ( rcd1-like cell differentiation protein putative )

11 Proteins interacs with AT5G12980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33040

Predicted

two hybrid

two hybrid

FSW = 0.0345

Unknown

ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC)
AT2G27100

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0504

Unknown

SE (SERRATE) DNA BINDING / TRANSCRIPTION FACTOR
AT5G39740

Predicted

two hybrid

two hybrid

FSW = 0.0117

Unknown

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G29570

Predicted

two hybrid

FSW = 0.0304

Unknown

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G26840

Predicted

two hybrid

two hybrid

FSW = 0.0656

Unknown

ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING
AT4G11260

Predicted

two hybrid

two hybrid

FSW = 0.0556

Unknown

SGT1B PROTEIN BINDING
AT2G25740

Predicted

two hybrid

FSW = 0.2382

Unknown

ATP-DEPENDENT PROTEASE LA (LON) DOMAIN-CONTAINING PROTEIN
AT5G47650

Predicted

two hybrid

FSW = 0.1111

Unknown

ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE
AT5G47240

Predicted

two hybrid

FSW = 0.0346

Unknown

ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE
AT3G20800

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0545

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT2G32550

Predicted

Phylogenetic profile method

FSW = 0.0933

Unknown

RCD1-LIKE CELL DIFFERENTIATION FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454