Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12980 - ( rcd1-like cell differentiation protein putative )
11 Proteins interacs with AT5G12980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33040 | Predictedtwo hybridtwo hybrid | FSW = 0.0345
| Unknown | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT2G27100 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0504
| Unknown | SE (SERRATE) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G39740 | Predictedtwo hybridtwo hybrid | FSW = 0.0117
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G29570 | Predictedtwo hybrid | FSW = 0.0304
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G26840 | Predictedtwo hybridtwo hybrid | FSW = 0.0656
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT4G11260 | Predictedtwo hybridtwo hybrid | FSW = 0.0556
| Unknown | SGT1B PROTEIN BINDING |
AT2G25740 | Predictedtwo hybrid | FSW = 0.2382
| Unknown | ATP-DEPENDENT PROTEASE LA (LON) DOMAIN-CONTAINING PROTEIN |
AT5G47650 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G47240 | Predictedtwo hybrid | FSW = 0.0346
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT3G20800 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0545
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT2G32550 | PredictedPhylogenetic profile method | FSW = 0.0933
| Unknown | RCD1-LIKE CELL DIFFERENTIATION FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454