Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13010 - ( EMB3011 (embryo defective 3011) ATP binding / RNA helicase/ helicase/ nucleic acid binding )

61 Proteins interacs with AT5G13010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3453

Unknown

LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT1G76040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4392

Unknown

CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G34480

Predicted

Affinity Capture-MS

FSW = 0.1621

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G31780

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2144

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT4G01320

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0938

Unknown

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT3G26590

Predicted

biochemical

FSW = 0.0222

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0351

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G20620

Predicted

Synthetic Rescue

FSW = 0.0222

Unknown

CAT3 (CATALASE 3) CATALASE
AT1G20960

Predicted

two hybrid

Affinity Capture-Western

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0745

Unknown

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G74710

Predicted

Affinity Capture-MS

FSW = 0.0605

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT2G44350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3841

Unknown

ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT5G25400

Predicted

Affinity Capture-MS

FSW = 0.0861

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT1G80070

Predicted

Synthetic Rescue

Synthetic Lethality

Synthetic Lethality

FSW = 0.0656

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT3G23940

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4302

Unknown

DEHYDRATASE FAMILY
AT3G54670

Predicted

Phenotypic Suppression

FSW = 0.0095

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT3G18790

Predicted

Synthetic Rescue

Affinity Capture-Western

FSW = 0.0913

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT1G73230

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3341

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT3G55810

Predicted

Affinity Capture-MS

FSW = 0.1087

Unknown

PYRUVATE KINASE PUTATIVE
AT1G55690

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G40370

Predicted

Affinity Capture-MS

FSW = 0.0305

Unknown

GLUTAREDOXIN PUTATIVE
AT1G77210

Predicted

Affinity Capture-MS

FSW = 0.1474

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G08290

Predicted

interaction prediction

FSW = 0.0373

Unknown

YLS8 CATALYTIC
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

SR45 RNA BINDING / PROTEIN BINDING
AT4G34430

Predicted

Affinity Capture-MS

interologs mapping

Affinity Capture-MS

synthetic growth defect

FSW = 0.2661

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT4G25630

Predicted

Synthetic Lethality

FSW = 0.0014

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G52250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1733

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT5G27720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0663

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G36590

Predicted

Affinity Capture-MS

FSW = 0.3546

Unknown

MADS-BOX PROTEIN (AGL40)
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.2178

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT3G26560

Predicted

two hybrid

FSW = 0.1235

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT4G30990

Predicted

interaction prediction

FSW = 0.0023

Unknown

BINDING
AT2G38960

Predicted

biochemical

FSW = 0.0170

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT1G10580

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

interologs mapping

in vitro

interaction prediction

FSW = 0.0677

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G05660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3940

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G65660

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

interologs mapping

co-fractionation

Co-fractionation

Synthetic Lethality

co-fractionation

Co-fractionation

interologs mapping

FSW = 0.0962

Unknown

SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING
AT1G75020

Predicted

Reconstituted Complex

FSW = 0.0995

Unknown

LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4) ACYLTRANSFERASE
AT2G34980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2874

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G46070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3319

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G27440

Predicted

Phenotypic Enhancement

FSW = 0.0081

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT4G24160

Predicted

Reconstituted Complex

FSW = 0.0557

Unknown

HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT5G01640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4801

Unknown

PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5)
AT1G10600

Predicted

Affinity Capture-MS

FSW = 0.2436

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK)
AT1G25260

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3352

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G26140

Predicted

Affinity Capture-MS

FSW = 0.1141

Unknown

UNKNOWN PROTEIN
AT1G27320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

FSW = 0.2477

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT2G14560

Predicted

Affinity Capture-MS

FSW = 0.0606

Unknown

LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)
AT3G06470

Predicted

biochemical

FSW = 0.0271

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G18660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2179

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0120

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT4G14670

Predicted

Affinity Capture-MS

FSW = 0.0728

Unknown

CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G15770

Predicted

Synthetic Lethality

FSW = 0.0068

Unknown

RNA BINDING / PROTEIN BINDING
AT5G25030

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5467

Unknown

ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE
AT5G26250

Predicted

Affinity Capture-MS

FSW = 0.2237

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G37830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.4107

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G41770

Predicted

synthetic growth defect

FSW = 0.0519

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G44830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2759

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G59850Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4201

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT3G13210

Predicted

synthetic growth defect

FSW = 0.0884

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G27620

Predicted

interaction prediction

FSW = 0.0037

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G58180

Predicted

interaction prediction

FSW = 0.0093

Unknown

PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN
AT2G17510

Predicted

interaction prediction

FSW = 0.0041

Unknown

EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454