Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13150 - ( ATEXO70C1 (exocyst subunit EXO70 family protein C1) protein binding )

35 Proteins interacs with AT5G13150
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0429

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT3G09440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1412

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT1G12360

Predicted

interologs mapping

interologs mapping

interologs mapping

FSW = 0.1286

Unknown

KEU (KEULE) PROTEIN TRANSPORTER
AT3G26590

Predicted

biochemical

FSW = 0.0278

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G14420

Predicted

Affinity Capture-MS

FSW = 0.0857

Unknown

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT5G25400

Predicted

Affinity Capture-MS

FSW = 0.0344

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT5G16150

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.0727

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT1G10070

Predicted

Affinity Capture-MS

FSW = 0.0413

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G63980

Predicted

Affinity Capture-MS

FSW = 0.0877

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0480

Unknown

ARAC10 GTP BINDING
AT3G03800

Predicted

interologs mapping

FSW = 0.1224

Unknown

SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR
AT5G12370

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0894

Unknown

SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT3G09900

Predicted

interologs mapping

interologs mapping

interologs mapping

FSW = 0.0563

Unknown

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G71820

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1013

Unknown

SEC6
AT4G19690

Predicted

interologs mapping

interologs mapping

FSW = 0.0478

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT3G47960

Predicted

Affinity Capture-MS

interologs mapping

FSW = 0.4451

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G14340

Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G77950

Predicted

interologs mapping

FSW = 0.0615

Unknown

AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT2G36170Predicted

interologs mapping

Co-purification

FSW = 0.1121

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT1G09060

Predicted

Affinity Capture-MS

FSW = 0.0667

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT4G25780

Predicted

Affinity Capture-MS

FSW = 0.0428

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G10330Predicted

Affinity Capture-MS

interologs mapping

FSW = 0.0724

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G21170Predicted

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.1531

Unknown

SEC5B
AT3G56640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0684

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT4G18593

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1899

Unknown

DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT1G35530Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1939

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G53900

Predicted

Affinity Capture-MS

FSW = 0.0205

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G60680

Predicted

interologs mapping

FSW = 0.0582

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G79910

Predicted

Affinity Capture-MS

FSW = 0.0923

Unknown

UNKNOWN PROTEIN
AT2G19540

Predicted

Affinity Capture-MS

FSW = 0.0516

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G24010

Predicted

Affinity Capture-MS

FSW = 0.0033

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G49880

Predicted

Affinity Capture-MS

FSW = 0.0211

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.0277

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G24670

Predicted

Affinity Capture-MS

FSW = 0.0340

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454