Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G13150 - ( ATEXO70C1 (exocyst subunit EXO70 family protein C1) protein binding )
35 Proteins interacs with AT5G13150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT3G09440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1412
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT1G12360 | Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.1286
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT3G26590 | Predictedbiochemical | FSW = 0.0278
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G14420 | PredictedAffinity Capture-MS | FSW = 0.0857
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G16150 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0727
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G63980 | PredictedAffinity Capture-MS | FSW = 0.0877
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | ARAC10 GTP BINDING |
AT3G03800 | Predictedinterologs mapping | FSW = 0.1224
| Unknown | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
AT5G12370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0894
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT3G09900 | Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.0563
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT1G71820 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1013
| Unknown | SEC6 |
AT4G19690 | Predictedinterologs mappinginterologs mapping | FSW = 0.0478
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT3G47960 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.4451
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G77950 | Predictedinterologs mapping | FSW = 0.0615
| Unknown | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT2G36170 | Predictedinterologs mappingCo-purification | FSW = 0.1121
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G09060 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G10330 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.0724
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G21170 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1531
| Unknown | SEC5B |
AT3G56640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0684
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G18593 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1899
| Unknown | DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED |
AT1G35530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1939
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G60680 | Predictedinterologs mapping | FSW = 0.0582
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G79910 | PredictedAffinity Capture-MS | FSW = 0.0923
| Unknown | UNKNOWN PROTEIN |
AT2G19540 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G24010 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454