Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13240 - ( transcription regulator )

13 Proteins interacs with AT5G13240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G17745

Predicted

interaction prediction

two hybrid

FSW = 0.0400

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0073

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G07950

Predicted

Synthetic Rescue

FSW = 0.1698

Unknown

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT2G01280Predicted

Affinity Capture-Western

FSW = 0.1111

Unknown

MEE65 (MATERNAL EFFECT EMBRYO ARREST 65) RNA POLYMERASE II TRANSCRIPTION FACTOR/ CATIONCHLORIDE SYMPORTER
AT2G22290

Predicted

Phenotypic Suppression

FSW = 0.0431

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0041

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G06790

Predicted

Synthetic Rescue

FSW = 0.0973

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G60620

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0543

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G16565

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G29140

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

MATE EFFLUX PROTEIN-RELATED
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.0249

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G60040

Predicted

Synthetic Rescue

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

interaction prediction

FSW = 0.1846

Unknown

NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT5G45140

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

FSW = 0.2771

Unknown

NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454