Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G13300 - ( SFC (SCARFACE) ARF GTPase activator/ phosphoinositide binding )
31 Proteins interacs with AT5G13300Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42080 | Experimentaltwo hybridpull downconfocal microscopyReconstituted Complex | FSW = 0.0248
| Class A:plasma membraneClass B:vacuoleplastidgolgicytosolcytoskeletoncell plateClass D:nucleus (p = 0.78) | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G26980 | Experimentalconfocal microscopy | FSW = 0.0381
| Class A:golgiClass B:plasma membraneendoplasmic reticulumClass D:nucleus (p = 0.78) | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT1G69120 | Experimentalfar western blotting | FSW = 0.0102
| Class B:plasma membranenucleusgolgicytosolClass D:nucleus (p = 0.78) | AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G19350 | Experimentalpull down | FSW = 0.0314
| Class D:nucleus (p = 0.78) | BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT1G04250 | Experimentalfar western blotting | FSW = 0.0256
| Unknown | AXR3 (AUXIN RESISTANT 3) TRANSCRIPTION FACTOR |
AT1G28480 | Experimental | FSW = 0.0428
| Unknown | GRX480 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT2G20000 | Experimentalfar western blotting | FSW = 0.0501
| Unknown | HBT (HOBBIT) BINDING |
AT3G17750 | Predictedtwo hybrid | FSW = 0.0593
| Class C:plasma membrane | PROTEIN KINASE FAMILY PROTEIN |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | SCRAMBLASE-RELATED |
AT4G10760 | Predictedtwo hybrid | FSW = 0.0471
| Unknown | MTA (MRNA ADENOSINE METHYLASE) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE/ METHYLTRANSFERASE |
AT3G04820 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | PSEUDOURIDINE SYNTHASE |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0795
| Unknown | REPLICATION PROTEIN-RELATED |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0245
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G08730 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G25980 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0064
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT1G53710 | Predictedtwo hybrid | FSW = 0.0343
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G77720 | Predictedtwo hybrid | FSW = 0.0902
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G01120 | Predictedtwo hybrid | FSW = 0.0658
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G12980 | Predictedtwo hybrid | FSW = 0.0434
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G53930 | Predictedtwo hybrid | FSW = 0.0523
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G35750 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | RHO-GTPASE-ACTIVATING PROTEIN-RELATED |
AT5G11300 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19350 | Predictedtwo hybrid | FSW = 0.0261
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
AT5G27620 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G45190 | Predictedtwo hybrid | FSW = 0.1870
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0730
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G49110 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | UNKNOWN PROTEIN |
AT5G55760 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | SRT1 (SIRTUIN 1) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454