Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13450 - ( ATP synthase delta chain mitochondrial putative / H(+)-transporting two-sector ATPase delta (OSCP) subunit putative )
58 Proteins interacs with AT5G13450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G47030 | Experimentalbiochemical | FSW = 0.0625
| Class A:mitochondrionClass B:unclearplasma membraneClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL |
AT5G08670 | Predictedinteraction prediction | FSW = 0.0391
| Class C:plasma membranemitochondrion | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT3G22890 | PredictedPhenotypic Enhancement | FSW = 0.1342
| Class C:plasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G60540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2187
| Class C:plasma membrane | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT3G48930 | Predictedbiochemical | FSW = 0.0195
| Class C:plasma membrane | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G32670 | PredictedSynthetic Lethality | FSW = 0.1584
| Class C:plasma membrane | ATVAMP725 |
AT3G53870 | Predictedbiochemical | FSW = 0.0159
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G02450 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1191
| Class C:plasma membrane | GLYCINE-RICH PROTEIN |
AT2G07698 | Predictedinteraction prediction | FSW = 0.1194
| Class C:mitochondrion | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
AT5G47630 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0718
| Class C:mitochondrion | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0474
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G26590 | Predictedbiochemical | FSW = 0.0287
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0542
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G56160 | PredictedPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethality | FSW = 0.0813
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT5G06290 | Predictedbiochemical | FSW = 0.0161
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0450
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT2G43030 | PredictedPhenotypic Suppression | FSW = 0.0303
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT2G07741 | Predictedinteraction prediction | FSW = 0.1477
| Unknown | ATPASE SUBUNIT 6 PUTATIVE |
AT4G13980 | Predictedbiochemical | FSW = 0.0131
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G06960 | PredictedPhenotypic Enhancement | FSW = 0.0518
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT4G25340 | PredictedSynthetic Lethality | FSW = 0.1089
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G19980 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1397
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G38960 | Predictedbiochemical | FSW = 0.0178
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G60360 | PredictedSynthetic Lethality | FSW = 0.1263
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G39200 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1815
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G46470 | PredictedAffinity Capture-Western | FSW = 0.0276
| Unknown | OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.0547
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0916
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G11510 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.2892
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G11755 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2147
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
AT1G20693 | PredictedSynthetic Lethality | FSW = 0.0958
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G35350 | PredictedPhenotypic Enhancement | FSW = 0.0744
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0492
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G80710 | PredictedSynthetic Lethality | FSW = 0.0795
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G01600 | PredictedSynthetic Lethality | FSW = 0.0403
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G15910 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0763
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0630
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G43190 | PredictedSynthetic Lethality | FSW = 0.0853
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT3G11230 | PredictedSynthetic Lethality | FSW = 0.1229
| Unknown | YIPPEE FAMILY PROTEIN |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.1011
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G08160 | PredictedPhenotypic Enhancement | FSW = 0.0200
| Unknown | ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G10090 | PredictedSynthetic Lethality | FSW = 0.1079
| Unknown | UNKNOWN PROTEIN |
AT3G13210 | PredictedPhenotypic Enhancement | FSW = 0.0922
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G47290 | PredictedPhenotypic Enhancement | FSW = 0.1806
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0155
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0258
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G24840 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0639
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G42720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1308
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G66640 | Predictedbiochemical | FSW = 0.0226
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G15240 | PredictedSynthetic Lethality | FSW = 0.0248
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0491
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G16980 | PredictedPhenotypic Enhancement | FSW = 0.1208
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.1247
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT3G19420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0064
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.0231
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454