Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13490 - ( AAC2 (ADP/ATP carrier 2) ATPADP antiporter/ binding )
30 Proteins interacs with AT5G13490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0033
| Class A:vacuolenucleusClass B:unclearplastidplasma membraneperoxisomemitochondrioncytosolcytoskeleton | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G08580 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.6151
| Class C:vacuoleunclearplastidnucleusmitochondrion | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
AT3G56190 | Predictedinteraction prediction | FSW = 0.0094
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0296
| Class C:vacuole | BINDING |
AT4G28390 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0817
| Class C:unclearplastidmitochondrion | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT5G51050 | Predictedinterologs mapping | FSW = 0.0306
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G46560 | Predictedinteraction prediction | FSW = 0.1176
| Class C:mitochondrion | TIM9 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT2G29530 | Predictedinteraction prediction | FSW = 0.0756
| Class C:mitochondrion | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE (TIM10) |
AT5G17400 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1984
| Class C:mitochondrion | ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) ATPADP ANTIPORTER/ BINDING |
AT5G56450 | PredictedPhylogenetic profile method | FSW = 0.2137
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G11890 | Predictedtwo hybridinteraction prediction | FSW = 0.0368
| Unknown | SEC22 TRANSPORTER |
AT1G07670 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT1G50360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0373
| Unknown | VIIIA MOTOR |
AT5G20890 | PredictedSynthetic Lethality | FSW = 0.0865
| Unknown | CHAPERONIN PUTATIVE |
AT5G42890 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | SCP2 (STEROL CARRIER PROTEIN 2) OXIDOREDUCTASE/ STEROL CARRIER |
AT4G33720 | Predictedtwo hybrid | FSW = 0.0212
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G20050 | PredictedSynthetic Lethality | FSW = 0.0638
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0095
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G48150 | Predictedtwo hybrid | FSW = 0.0373
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT1G71790 | Predictedtwo hybridtwo hybrid | FSW = 0.0277
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT2G04845 | Predictedtwo hybridtwo hybrid | FSW = 0.1143
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0312
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G16950 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0189
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT3G47290 | Predictedtwo hybrid | FSW = 0.0118
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT5G26360 | PredictedSynthetic Lethality | FSW = 0.0591
| Unknown | CHAPERONIN PUTATIVE |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G41980 | Predictedtwo hybrid | FSW = 0.0441
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT1G59860 | Predictedtwo hybrid | FSW = 0.1219
| Unknown | 176 KDA CLASS I HEAT SHOCK PROTEIN (HSP176A-CI) |
AT1G72340 | Predictedinteraction prediction | FSW = 0.0082
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454