Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13570 - ( DCP2 (DECAPPING 2) hydrolase/ m7G(5)pppN diphosphatase/ mRNA binding / protein homodimerization )
35 Proteins interacs with AT5G13570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G08370 | Experimentalcoimmunoprecipitation | FSW = 0.1355
| Unknown | DCP1 (DECAPPING 1) M7G(5)PPPN DIPHOSPHATASE/ PROTEIN HOMODIMERIZATION |
AT3G13300 | ExperimentalcoimmunoprecipitationAffinity Capture-WesternReconstituted Complex | FSW = 0.1154
| Unknown | VCS (VARICOSE) NUCLEOTIDE BINDING / PROTEIN HOMODIMERIZATION |
AT1G26110 | ExperimentalReconstituted ComplexAffinity Capture-Western | FSW = 0.1154
| Unknown | UNKNOWN PROTEIN |
AT3G05630 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT5G22440 | PredictedAffinity Capture-RNA | FSW = 0.0271
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT3G60820 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G29320 | Predictedtwo hybridinteraction prediction | FSW = 0.0800
| Unknown | GLUCAN PHOSPHORYLASE PUTATIVE |
AT2G27710 | PredictedAffinity Capture-RNA | FSW = 0.0375
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT2G14120 | Predictedtwo hybridinteraction prediction | FSW = 0.0182
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT5G47010 | Predictedinteraction predictionAffinity Capture-Westernin vitro | FSW = 0.0498
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT5G22770 | Predictedinteraction predictiontwo hybrid | FSW = 0.0120
| Unknown | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G69120 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0162
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G19120 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0839
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G37940 | PredictedAffinity Capture-MS | FSW = 0.0249
| Unknown | AGL21 TRANSCRIPTION FACTOR |
AT1G72440 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0249
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT5G27720 | Predictedinteraction predictiontwo hybrid | FSW = 0.0351
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G63210 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
AT1G65440 | Predictedtwo hybridinteraction prediction | FSW = 0.0192
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT1G03330 | Predictedinteraction predictiontwo hybrid | FSW = 0.0895
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G76860 | PredictedAffinity Capture-MS | FSW = 0.1060
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G21190 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G70190 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT1G33980 | PredictedAffinity Capture-Western | FSW = 0.0889
| Unknown | SMG-4/UPF3 FAMILY PROTEIN |
AT2G39260 | PredictedAffinity Capture-Western | FSW = 0.0927
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT1G22240 | Predictedtwo hybridinteraction prediction | FSW = 0.0081
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT3G08850 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | RAPTOR1 NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G16785 | Predictedtwo hybridinteraction prediction | FSW = 0.0383
| Unknown | PLDP1 (PHOSPHOLIPASE D P1) PHOSPHOLIPASE D |
AT4G36420 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT3G03110 | Predictedtwo hybridinteraction prediction | FSW = 0.0118
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT5G38890 | PredictedSynthetic Lethality | FSW = 0.0301
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G58030 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT5G15770 | Predictedinteraction prediction | FSW = 0.1112
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT5G01770 | Predictedinteraction prediction | FSW = 0.0038
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454