Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G13680 - ( ABO1 (ABA-OVERLY SENSITIVE 1) transcription elongation regulator )
57 Proteins interacs with AT5G13680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0404
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G19980 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0425
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.1378
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.1488
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT4G35800 | PredictedCo-purificationco-fractionationCo-fractionationco-fractionationCo-fractionationCo-purificationinteraction prediction | FSW = 0.1995
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1028
| Unknown | SEC22 TRANSPORTER |
AT3G09900 | PredictedSynthetic RescueCo-expression | FSW = 0.0077
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT4G26110 | PredictedSynthetic Lethality | FSW = 0.0300
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT1G20970 | PredictedReconstituted ComplexSynthetic Rescuetwo hybrid | FSW = 0.0754
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT2G19480 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT5G57015 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0377
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0392
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G67270 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0971
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G54610 | PredictedSynthetic Lethality | FSW = 0.0814
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G09920 | Predictedinteraction prediction | FSW = 0.1846
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT5G08630 | PredictedPhenotypic Enhancement | FSW = 0.0441
| Unknown | DDT DOMAIN-CONTAINING PROTEIN |
AT2G47210 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT3G20010 | PredictedPhenotypic Enhancement | FSW = 0.0429
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0791
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0668
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G15430 | Predictedinteraction prediction | FSW = 0.1589
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G44950 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1321
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0738
| Unknown | ATEB1A MICROTUBULE BINDING |
AT4G21710 | Predictedinteraction predictionCo-expression | FSW = 0.1427
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G09230 | Predictedtwo hybridtwo hybrid | FSW = 0.0167
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G25800 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0164
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT1G15780 | PredictedSynthetic Lethality | FSW = 0.1205
| Unknown | UNKNOWN PROTEIN |
AT1G34150 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G49540 | PredictedCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressioninteraction prediction | FSW = 0.5420
| Unknown | NUCLEOTIDE BINDING |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.1159
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G59890 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1857
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G61040 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2127
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G79730 | PredictedSynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.2693
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethalityinteraction predictionCo-expression | FSW = 0.2049
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT5G10390 | PredictedSynthetic Lethality | FSW = 0.0597
| Unknown | HISTONE H3 |
AT1G07270 | Predictedsynthetic growth defect | FSW = 0.0092
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G13870 | PredictedAffinity Capture-Western | FSW = 0.2558
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G54140 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.1729
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G02760 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1606
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G15910 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0147
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT3G21060 | PredictedSynthetic LethalityCo-expression | FSW = 0.1795
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G25120 | Predictedtwo hybrid | FSW = 0.0868
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G10270 | PredictedSynthetic Lethality | FSW = 0.2469
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0986
| Unknown | BINDING |
AT5G45600 | PredictedAffinity Capture-MS | FSW = 0.1815
| Unknown | GAS41 PROTEIN BINDING |
AT5G50320 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic Suppressionco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.5106
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G58003 | PredictedSynthetic Lethality | FSW = 0.2222
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0524
| Unknown | BINDING |
AT2G18000 | PredictedAffinity Capture-MS | FSW = 0.1845
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT1G50370 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0829
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G55255 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0735
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G14400 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1187
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G49660 | PredictedSynthetic Lethality | FSW = 0.0735
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G10450 | PredictedSynthetic Lethality | FSW = 0.1461
| Unknown | SNL6 (SIN3-LIKE 6) |
AT1G20320 | PredictedSynthetic Lethality | FSW = 0.1791
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT3G22320 | Predictedinteraction prediction | FSW = 0.0948
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G51940 | Predictedinteraction prediction | FSW = 0.0912
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454