Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13680 - ( ABO1 (ABA-OVERLY SENSITIVE 1) transcription elongation regulator )

57 Proteins interacs with AT5G13680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0404

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G19980

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0425

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G28190

Predicted

Phenotypic Enhancement

FSW = 0.1378

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.1488

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT4G35800

Predicted

Co-purification

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

Co-purification

interaction prediction

FSW = 0.1995

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1028

Unknown

SEC22 TRANSPORTER
AT3G09900

Predicted

Synthetic Rescue

Co-expression

FSW = 0.0077

Unknown

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT4G26110

Predicted

Synthetic Lethality

FSW = 0.0300

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT1G20970Predicted

Reconstituted Complex

Synthetic Rescue

two hybrid

FSW = 0.0754

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT2G19480

Predicted

Synthetic Lethality

FSW = 0.0331

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT5G57015

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0377

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0392

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G67270

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0971

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G54610

Predicted

Synthetic Lethality

FSW = 0.0814

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G09920

Predicted

interaction prediction

FSW = 0.1846

Unknown

NRPB4 DNA-DIRECTED RNA POLYMERASE
AT5G08630

Predicted

Phenotypic Enhancement

FSW = 0.0441

Unknown

DDT DOMAIN-CONTAINING PROTEIN
AT2G47210

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

MYB FAMILY TRANSCRIPTION FACTOR
AT3G20010

Predicted

Phenotypic Enhancement

FSW = 0.0429

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0791

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0668

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT2G15430

Predicted

interaction prediction

FSW = 0.1589

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G44950

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.1321

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G47690

Predicted

Synthetic Lethality

FSW = 0.0738

Unknown

ATEB1A MICROTUBULE BINDING
AT4G21710

Predicted

interaction prediction

Co-expression

FSW = 0.1427

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G09230

Predicted

two hybrid

two hybrid

FSW = 0.0167

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G25800

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0164

Unknown

EXONUCLEASE FAMILY PROTEIN
AT1G15780

Predicted

Synthetic Lethality

FSW = 0.1205

Unknown

UNKNOWN PROTEIN
AT1G34150

Predicted

Phenotypic Enhancement

FSW = 0.1536

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G49540

Predicted

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interaction prediction

FSW = 0.5420

Unknown

NUCLEOTIDE BINDING
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1159

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G59890

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1857

Unknown

SNL5 (SIN3-LIKE 5)
AT1G61040

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2127

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G79730

Predicted

Synthetic Lethality

Synthetic Lethality

Co-expression

FSW = 0.2693

Unknown

ELF7 (EARLY FLOWERING 7)
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.2049

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT5G10390Predicted

Synthetic Lethality

FSW = 0.0597

Unknown

HISTONE H3
AT1G07270

Predicted

synthetic growth defect

FSW = 0.0092

Unknown

CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G13870

Predicted

Affinity Capture-Western

FSW = 0.2558

Unknown

DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING
AT1G54140

Predicted

Synthetic Lethality

Affinity Capture-MS

FSW = 0.1729

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G02760

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1606

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G15910

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0147

Unknown

CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT3G21060

Predicted

Synthetic Lethality

Co-expression

FSW = 0.1795

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G25120Predicted

two hybrid

FSW = 0.0868

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.2469

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0986

Unknown

BINDING
AT5G45600

Predicted

Affinity Capture-MS

FSW = 0.1815

Unknown

GAS41 PROTEIN BINDING
AT5G50320

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Phenotypic Suppression

co-fractionation

Co-fractionation

interaction prediction

Co-expression

FSW = 0.5106

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G58003

Predicted

Synthetic Lethality

FSW = 0.2222

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.0524

Unknown

BINDING
AT2G18000

Predicted

Affinity Capture-MS

FSW = 0.1845

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G50370

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0829

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G55255Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0735

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G14400

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1187

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G49660

Predicted

Synthetic Lethality

FSW = 0.0735

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G10450

Predicted

Synthetic Lethality

FSW = 0.1461

Unknown

SNL6 (SIN3-LIKE 6)
AT1G20320

Predicted

Synthetic Lethality

FSW = 0.1791

Unknown

NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT3G22320

Predicted

interaction prediction

FSW = 0.0948

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G51940

Predicted

interaction prediction

FSW = 0.0912

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454