Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13960 - ( SUVH4 (SU(VAR)3-9 HOMOLOG 4) double-stranded methylated DNA binding / histone methyltransferase(H3-K9 specific) / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding )

7 Proteins interacs with AT5G13960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G25630

Predicted

Shared biological function

Co-expression

FSW = 0.0180

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G52470

Predicted

Shared biological function

Co-expression

FSW = 0.0933

Unknown

FIB1 (FIBRILLARIN 1) SNORNA BINDING
AT2G33290

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.2882

Unknown

SUVH2 (SU(VAR)3-9 HOMOLOG 2) HISTONE METHYLTRANSFERASE
AT2G22740

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.2882

Unknown

SUVH6 METHYL-CPG BINDING / METHYL-CPNPG BINDING / METHYL-CPNPN BINDING / METHYLTRANSFERASE
AT2G35160

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.2742

Unknown

SUVH5 (SU(VAR)3-9 HOMOLOG 5) HISTONE METHYLTRANSFERASE
AT2G31650

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.3036

Unknown

ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX) HISTONE-LYSINE N-METHYLTRANSFERASE/ PHOSPHATIDYLINOSITOL-5-PHOSPHATE BINDING
AT2G32630

Predicted

Gene fusion method

FSW = 0.0656

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454