Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G14050 - ( transducin family protein / WD-40 repeat family protein )

56 Proteins interacs with AT5G14050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT1G78900

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0091

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G11870

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0053

Unknown

SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT3G06530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1905

Unknown

BINDING
AT3G11964Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1008

Unknown

RNA BINDING
AT1G73230

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0341

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT3G17390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0804

Unknown

MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT2G47160

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0716

Unknown

BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT1G07630

Predicted

Affinity Capture-MS

FSW = 0.0452

Unknown

PLL5 CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G44680

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0241

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT1G63810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2341

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT1G79020

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

TRANSCRIPTION FACTOR-RELATED
AT3G19840

Predicted

Affinity Capture-MS

FSW = 0.0056

Unknown

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT4G25630

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1044

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2003

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G27720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0372

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT3G12860

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.2000

Unknown

NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT1G56110

Predicted

Affinity Capture-MS

FSW = 0.0444

Unknown

NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56)
AT5G66540

Predicted

Affinity Capture-Western

Affinity Capture-MS

Co-expression

FSW = 0.2692

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT1G10060

Predicted

Phenotypic Enhancement

FSW = 0.0087

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT2G47990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1863

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT3G60360

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0212

Unknown

EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT1G10490

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1464

Unknown

UNKNOWN PROTEIN
AT3G48470

Predicted

Phenotypic Enhancement

FSW = 0.0066

Unknown

EMB2423 (EMBRYO DEFECTIVE 2423)
AT3G07370

Predicted

two hybrid

two hybrid

FSW = 0.0104

Unknown

CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT1G10040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0301

Unknown

UNKNOWN PROTEIN
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1126

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G76920

Predicted

Phenotypic Suppression

FSW = 0.0183

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT1G80710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0112

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G23070

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0266

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G35390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0285

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G36260

Predicted

Phenotypic Enhancement

FSW = 0.0375

Unknown

IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE
AT2G43190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0098

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT3G13230

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1571

Unknown

RNA BINDING
AT3G55020

Predicted

Affinity Capture-MS

FSW = 0.1392

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT4G02400

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0375

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK)
AT4G04940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

Co-expression

FSW = 0.3004

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G07410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3032

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G21800

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING
AT4G28200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2754

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G33200

Predicted

Phenotypic Enhancement

FSW = 0.0188

Unknown

XI-I MOTOR/ PROTEIN BINDING
AT4G36630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0772

Unknown

EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR
AT5G02760

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0194

Unknown

PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN
AT1G72320

Predicted

Affinity Capture-MS

FSW = 0.1866

Unknown

APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT5G15750

Predicted

Affinity Capture-MS

FSW = 0.2419

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1863

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G50320

Predicted

Affinity Capture-MS

FSW = 0.0037

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G64240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0613

Unknown

ATMC3 (METACASPASE 3) CYSTEINE-TYPE ENDOPEPTIDASE
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0143

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.0517

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G07840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0400

Unknown

LEUCINE ZIPPER FACTOR-RELATED
AT1G44910

Predicted

Affinity Capture-MS

FSW = 0.0077

Unknown

PROTEIN BINDING
AT1G27470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1488

Unknown

TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT1G29120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0678

Unknown

UNKNOWN PROTEIN
AT5G67380

Predicted

interaction prediction

FSW = 0.0665

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT3G19670Predicted

interaction prediction

FSW = 0.0233

Unknown

PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454