Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14050 - ( transducin family protein / WD-40 repeat family protein )
56 Proteins interacs with AT5G14050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G78900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0091
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G11870 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0053
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT3G06530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1905
| Unknown | BINDING |
AT3G11964 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1008
| Unknown | RNA BINDING |
AT1G73230 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0341
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT3G17390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0804
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT2G47160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0716
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT1G07630 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | PLL5 CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G44680 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0241
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G63810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2341
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G19840 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT4G25630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1044
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2003
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0372
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT3G12860 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2000
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G56110 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT5G66540 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-expression | FSW = 0.2692
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
AT1G10060 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT2G47990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1863
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT3G60360 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0212
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT1G10490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1464
| Unknown | UNKNOWN PROTEIN |
AT3G48470 | PredictedPhenotypic Enhancement | FSW = 0.0066
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
AT3G07370 | Predictedtwo hybridtwo hybrid | FSW = 0.0104
| Unknown | CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE |
AT1G10040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0301
| Unknown | UNKNOWN PROTEIN |
AT1G15440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1126
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.0183
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G80710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0112
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G23070 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0266
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0285
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G36260 | PredictedPhenotypic Enhancement | FSW = 0.0375
| Unknown | IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE |
AT2G43190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0098
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT3G13230 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1571
| Unknown | RNA BINDING |
AT3G55020 | PredictedAffinity Capture-MS | FSW = 0.1392
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT4G02400 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0375
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK) |
AT4G04940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionCo-expression | FSW = 0.3004
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G07410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3032
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G28200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2754
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT4G33200 | PredictedPhenotypic Enhancement | FSW = 0.0188
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
AT4G36630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0772
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT5G02760 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0194
| Unknown | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN |
AT1G72320 | PredictedAffinity Capture-MS | FSW = 0.1866
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
AT5G15750 | PredictedAffinity Capture-MS | FSW = 0.2419
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
AT5G16750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1863
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G50320 | PredictedAffinity Capture-MS | FSW = 0.0037
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G64240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0613
| Unknown | ATMC3 (METACASPASE 3) CYSTEINE-TYPE ENDOPEPTIDASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0143
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0517
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G07840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0400
| Unknown | LEUCINE ZIPPER FACTOR-RELATED |
AT1G44910 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | PROTEIN BINDING |
AT1G27470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1488
| Unknown | TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED |
AT1G29120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0678
| Unknown | UNKNOWN PROTEIN |
AT5G67380 | Predictedinteraction prediction | FSW = 0.0665
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT3G19670 | Predictedinteraction prediction | FSW = 0.0233
| Unknown | PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454