Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14250 - ( COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) protein binding )
23 Proteins interacs with AT5G14250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G32950 | Experimentalmolecular sieving | FSW = 0.0889
| Class D:nucleus (p = 0.78) | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G15850 | Experimentalmolecular sievingAffinity Capture-Westernaffinity technology | FSW = 0.2749
| Class D:nucleus (p = 0.78) | COL1 (CONSTANS-LIKE 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G56280 | Experimentaltwo hybrid | FSW = 0.4269
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | CSN6A |
AT3G61140 | Experimentalco-fractionationCo-fractionationAffinity Capture-Westerntwo hybridaffinity technologyco-fractionationCo-fractionation | FSW = 0.3068
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | FUS6 (FUSCA 6) |
AT1G71230 | Experimentalaffinity technologyAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.3721
| Class D:nucleus (p = 0.78) | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT1G22920 | Experimental | FSW = 0.3068
| Class D:nucleus (p = 0.78) | CSN5A (COP9 SIGNALOSOME 5A) |
AT5G42970 | Experimentaltwo hybridAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.4438
| Class D:cytosol (p = 0.67) | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT4G14110 | Experimentaltwo hybridtwo hybrid | FSW = 0.5122
| Class D:cytosol (p = 0.67) | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING |
AT2G26990 | Experimentaltwo hybrid | FSW = 0.3200
| Class D:cytosol (p = 0.67) | FUS12 (FUSCA 12) |
AT1G02090 | Experimentaltwo hybrid | FSW = 0.3776
| Class D:cytosol (p = 0.67) | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT3G13550 | ExperimentalAffinity Capture-Westerntwo hybrid | FSW = 0.1569
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G39940 | Experimental | FSW = 0.0788
| Unknown | COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G01090 | Experimentalinteraction detection method | FSW = 0.0053
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G46210 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2258
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0106
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G06160 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0309
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G16590 | Predictedtwo hybrid | FSW = 0.0914
| Unknown | REV7 DNA BINDING |
AT3G27530 | Predictedtwo hybridtwo hybrid | FSW = 0.0301
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT5G37590 | Predictedtwo hybrid | FSW = 0.0741
| Unknown | BINDING |
AT5G47240 | Predictedtwo hybridtwo hybrid | FSW = 0.0186
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.1045
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT1G30090 | Predictedtwo hybrid | FSW = 0.0952
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454