Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14590 - ( isocitrate dehydrogenase putative / NADP+ isocitrate dehydrogenase putative )

14 Proteins interacs with AT5G14590
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G03290

Predicted

interologs mapping

FSW = 0.0802

Class C:

plastid

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G01250

Predicted

two hybrid

FSW = 0.0204

Class C:

plastid

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT5G10450

Predicted

two hybrid

FSW = 0.0179

Class C:

plastid

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G35260

Predicted

interologs mapping

FSW = 0.1053

Class C:

mitochondrion

IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0067

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.0227

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G54340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3407

Unknown

ICDH (ISOCITRATE DEHYDROGENASE) ISOCITRATE DEHYDROGENASE (NADP+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT4G34670

Predicted

Affinity Capture-MS

FSW = 0.0247

Unknown

40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT5G63680

Predicted

Affinity Capture-MS

FSW = 0.0552

Unknown

PYRUVATE KINASE PUTATIVE
AT5G60790

Predicted

Affinity Capture-MS

FSW = 0.0274

Unknown

ATGCN1 TRANSPORTER
AT1G65930

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1625

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G31970

Predicted

Affinity Capture-MS

FSW = 0.0137

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G29540

Predicted

two hybrid

FSW = 0.0147

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G11910

Predicted

Affinity Capture-MS

FSW = 0.0435

Unknown

UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454