Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G14670 - ( ATARFA1B (ADP-ribosylation factor A1B) GTP binding / phospholipase activator/ protein binding )
40 Proteins interacs with AT5G14670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6024
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G10630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4719
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G67560 | PredictedPhylogenetic profile method | FSW = 0.5284
| Unknown | ATARLA1D (ADP-RIBOSYLATION FACTOR-LIKE A1D) GTP BINDING |
AT3G05630 | Predictedin vivoin vivoin vivoin vitroReconstituted Complex | FSW = 0.0356
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT2G47170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5862
| Unknown | ARF1A1C GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT2G24765 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4983
| Unknown | ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING |
AT1G70490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2807
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G11380 | Predictedin vivoin vitro | FSW = 0.0164
| Unknown | BETA-ADAPTIN PUTATIVE |
AT5G02730 | Predictedtwo hybrid | FSW = 0.0042
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G21160 | Predictedin vivoin vivo | FSW = 0.0511
| Unknown | ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING |
AT2G34840 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1449
| Unknown | COATOMER PROTEIN EPSILON SUBUNIT FAMILY PROTEIN / COPE FAMILY PROTEIN |
AT5G03730 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G29900 | PredictedPhenotypic Enhancement | FSW = 0.0093
| Unknown | PRESENILIN FAMILY PROTEIN |
AT5G12410 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT1G23230 | PredictedPhenotypic Enhancement | FSW = 0.0620
| Unknown | UNKNOWN PROTEIN |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0028
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G38630 | Predictedtwo hybrid | FSW = 0.0040
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G22840 | Predictedtwo hybrid | FSW = 0.0058
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G60570 | Predictedtwo hybrid | FSW = 0.0207
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT3G15870 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | OXIDOREDUCTASE |
AT3G54230 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT5G25800 | Predictedtwo hybrid | FSW = 0.0384
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT1G48760 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0303
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G60070 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0677
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G21260 | PredictedAffinity Capture-MS | FSW = 0.0930
| Unknown | GLYCOLIPID TRANSFER PROTEIN-RELATED |
AT3G25040 | Predictedin vivoAffinity Capture-MS | FSW = 0.0837
| Unknown | ER LUMEN PROTEIN RETAINING RECEPTOR PUTATIVE / HDEL RECEPTOR PUTATIVE |
AT3G53710 | Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0569
| Unknown | AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G24550 | Predictedin vitrotwo hybrid | FSW = 0.0818
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT4G31480 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0928
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT4G34450 | Predictedin vivoin vitro | FSW = 0.0435
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT3G22950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5245
| Unknown | ATARFC1 (ADP-RIBOSYLATION FACTOR C1) GTP BINDING |
AT5G37680 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5536
| Unknown | ATARLA1A (ADP-RIBOSYLATION FACTOR-LIKE A1A) GTP BINDING |
AT3G03120 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5862
| Unknown | ATARFB1C (ADP-RIBOSYLATION FACTOR B1C) GTP BINDING |
AT1G23490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5536
| Unknown | ATARF1 (ADP-RIBOSYLATION FACTOR 1) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G17060 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5862
| Unknown | ATARFB1B GTP BINDING |
AT2G15310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5614
| Unknown | ATARFB1A (ADP-RIBOSYLATION FACTOR B1A) GTP BINDING |
AT5G52210 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1927
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT3G49860 | PredictedPhylogenetic profile method | FSW = 0.5284
| Unknown | ATARLA1B (ADP-RIBOSYLATION FACTOR-LIKE A1B) GTP BINDING |
AT1G02430 | PredictedPhylogenetic profile method | FSW = 0.5284
| Unknown | ATARFD1B (ADP-RIBOSYLATION FACTOR D1B) GTP BINDING |
AT1G02440 | PredictedPhylogenetic profile method | FSW = 0.5862
| Unknown | ATARFD1A (ADP-RIBOSYLATION FACTOR D1A) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454