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AT5G15200 - ( 40S ribosomal protein S9 (RPS9B) )

96 Proteins interacs with AT5G15200

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.3374	Class C: vacuole plastid nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2426	Class C: vacuole plastid nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.4330	Class C: vacuole plastid nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2286	Class C: vacuole plastid nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.3330	Class C: vacuole plastid	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G07660	Predicted Affinity Capture-MS	FSW = 0.0113	Class C: vacuole plastid	HISTONE H4
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.2781	Class C: vacuole plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.4104	Class C: vacuole nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.3959	Class C: vacuole nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT2G37270	Predicted Affinity Capture-MS biochemical fluorescence acceptor donor pair fluorescence acceptor donor pair Synthetic Lethality	FSW = 0.4429	Class C: vacuole	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4851	Class C: vacuole	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.2702	Class C: vacuole	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.4095	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.2373	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G62870	Predicted biochemical	FSW = 0.0120	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G72370	Predicted Affinity Capture-MS Co-expression	FSW = 0.0927	Class C: plastid nucleus	P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.5413	Class C: plastid nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0578	Class C: plastid nucleus	HISTONE H4
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.3723	Class C: plastid	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.4129	Class C: plastid	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT4G33650	Predicted biochemical Synthetic Lethality	FSW = 0.0283	Class C: plastid	DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G06290	Predicted biochemical	FSW = 0.0066	Class C: plastid	2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT2G33340	Predicted Co-purification	FSW = 0.0970	Class C: plastid	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G04770	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1177	Class C: plastid	RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G18500	Predicted Affinity Capture-MS	FSW = 0.0288	Class C: plastid	MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-ISOPROPYLMALATE SYNTHASE
AT5G23010	Predicted Affinity Capture-MS	FSW = 0.0446	Class C: plastid	MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE
AT2G47250	Predicted Affinity Capture-MS	FSW = 0.0846	Class C: plastid	RNA HELICASE PUTATIVE
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3350	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.2203	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.2851	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.4638	Class C: nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.2250	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.3451	Class C: nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.5593	Class C: nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.3824	Class C: nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT1G77840	Predicted Affinity Capture-MS	FSW = 0.0996	Class C: nucleus	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT5G57015	Predicted Affinity Capture-MS	FSW = 0.0905	Class C: nucleus	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930	Predicted Affinity Capture-MS	FSW = 0.0644	Class C: nucleus	ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4029	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.2210	Class C: nucleus	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G57000	Predicted Affinity Capture-MS	FSW = 0.2012	Class C: nucleus	NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.4640	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.2885	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G18130	Predicted Affinity Capture-MS	FSW = 0.1174	Class C: nucleus	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT1G63810	Predicted Affinity Capture-MS	FSW = 0.2362	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT3G05060	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.2086	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860	Predicted Affinity Capture-MS	FSW = 0.2155	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.1499	Class C: nucleus	RNA HELICASE PUTATIVE
AT1G04510	Predicted Co-purification Co-expression	FSW = 0.0294	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G18040	Predicted Affinity Capture-MS	FSW = 0.0735	Class C: nucleus	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G66540	Predicted Affinity Capture-Western Affinity Capture-MS	FSW = 0.2329	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT2G14120	Predicted Affinity Capture-MS Co-purification Affinity Capture-MS	FSW = 0.0207	Unknown	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT5G17770	Predicted Affinity Capture-MS	FSW = 0.0251	Unknown	ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE
AT1G07670	Predicted Affinity Capture-MS	FSW = 0.0063	Unknown	CALCIUM-TRANSPORTING ATPASE
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.0915	Unknown	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.3486	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.3959	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.3614	Unknown	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.3169	Unknown	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT4G35950	Predicted biochemical fluorescence acceptor donor pair Reconstituted Complex	FSW = 0.0306	Unknown	ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING
AT1G10130	Predicted Affinity Capture-MS	FSW = 0.0018	Unknown	ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.2411	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.3086	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G10090	Predicted Affinity Capture-MS	FSW = 0.0754	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.3407	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.4612	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0505	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3694	Unknown	UNKNOWN PROTEIN
AT1G10280	Predicted biochemical	FSW = 0.0198	Unknown	UNKNOWN PROTEIN
AT1G16350	Predicted Affinity Capture-MS	FSW = 0.1491	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-expression	FSW = 0.3846	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2499	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G69070	Predicted Affinity Capture-MS	FSW = 0.2164	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT2G34357	Predicted Affinity Capture-MS	FSW = 0.2781	Unknown	BINDING
AT2G47420	Predicted Affinity Capture-MS	FSW = 0.2300	Unknown	DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G13230	Predicted Affinity Capture-MS	FSW = 0.1869	Unknown	RNA BINDING
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.3093	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3267	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G51270	Predicted Affinity Capture-MS	FSW = 0.2939	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.3014	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G28200	Predicted Affinity Capture-MS	FSW = 0.2416	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.1664	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1641	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G34340	Predicted Synthetic Lethality	FSW = 0.0138	Unknown	ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G80410	Predicted Affinity Capture-MS	FSW = 0.0084	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G16950	Predicted Affinity Capture-MS	FSW = 0.0503	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G24080	Predicted Affinity Capture-MS	FSW = 0.2410	Unknown	KRR1 FAMILY PROTEIN
AT4G30991	Predicted Affinity Capture-MS	FSW = 0.2290	Unknown	KRR1 FAMILY PROTEIN
AT5G41190	Predicted Affinity Capture-MS Co-expression	FSW = 0.0778	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G66100	Predicted Affinity Capture-MS	FSW = 0.0749	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT2G22425	Predicted Affinity Capture-MS	FSW = 0.0084	Unknown	PEPTIDASE
AT1G36730	Predicted Affinity Capture-MS	FSW = 0.0258	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT1G29550	Predicted Affinity Capture-MS	FSW = 0.0239	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT3G54250	Predicted two hybrid	FSW = 0.0327	Unknown	MEVALONATE DIPHOSPHATE DECARBOXYLASE PUTATIVE
AT5G11900	Predicted two hybrid	FSW = 0.0437	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN
AT5G39850	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0576	Unknown	40S RIBOSOMAL PROTEIN S9 (RPS9C)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT5G15200 - ( 40S ribosomal protein S9 (RPS9B) )

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