Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15240 - ( amino acid transporter family protein )
36 Proteins interacs with AT5G15240Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13450 | PredictedSynthetic Lethality | FSW = 0.0248
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT3G44310 | PredictedPhenotypic Enhancement | FSW = 0.0429
| Unknown | NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT2G25520 | PredictedAffinity Capture-MS | FSW = 0.0900
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT2G01350 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.1062
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G13120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1782
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT4G02050 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G48040 | PredictedAffinity Capture-MS | FSW = 0.0679
| Unknown | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
AT4G28860 | PredictedPhenotypic Enhancement | FSW = 0.0965
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G28460 | PredictedPhenotypic Enhancement | FSW = 0.0790
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.0759
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT1G52300 | PredictedPhenotypic Enhancement | FSW = 0.0605
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT2G17800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1996
| Unknown | ARAC1 GTP BINDING |
AT4G27070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0889
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT3G10610 | PredictedAffinity Capture-MS | FSW = 0.0409
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17C) |
AT3G44320 | PredictedPhenotypic Enhancement | FSW = 0.0794
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0917
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.0345
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT3G12200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0992
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G20280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1409
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G21800 | PredictedReconstituted Complex | FSW = 0.0602
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.1073
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G21370 | PredictedPhenotypic Enhancement | FSW = 0.0726
| Unknown | UNKNOWN PROTEIN |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.0532
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.1547
| Unknown | BOR5 ANION EXCHANGER |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0580
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.0198
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0354
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0466
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0639
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.0998
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G54940 | PredictedPhenotypic Enhancement | FSW = 0.0610
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G60550 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSsynthetic growth defect | FSW = 0.0744
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.1108
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G16740 | PredictedPhylogenetic profile method | FSW = 0.1026
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454