Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15240 - ( amino acid transporter family protein )

36 Proteins interacs with AT5G15240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G13450

Predicted

Synthetic Lethality

FSW = 0.0248

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT3G44310

Predicted

Phenotypic Enhancement

FSW = 0.0429

Unknown

NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT2G25520

Predicted

Affinity Capture-MS

FSW = 0.0900

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT2G01350

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING)
AT5G15450

Predicted

Phenotypic Enhancement

FSW = 0.1062

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G13120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1782

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT4G02050

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G48040

Predicted

Affinity Capture-MS

FSW = 0.0679

Unknown

ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE
AT4G28860

Predicted

Phenotypic Enhancement

FSW = 0.0965

Unknown

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G28460

Predicted

Phenotypic Enhancement

FSW = 0.0790

Unknown

AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT5G24090

Predicted

Synthetic Lethality

FSW = 0.0759

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT1G52300

Predicted

Phenotypic Enhancement

FSW = 0.0605

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT2G17800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.1996

Unknown

ARAC1 GTP BINDING
AT4G27070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0889

Unknown

TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT3G10610

Predicted

Affinity Capture-MS

FSW = 0.0409

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17C)
AT3G44320

Predicted

Phenotypic Enhancement

FSW = 0.0794

Unknown

NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT4G17190

Predicted

Phenotypic Enhancement

FSW = 0.0917

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G27320

Predicted

Phenotypic Enhancement

FSW = 0.0345

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT3G12200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0992

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G20280

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1409

Unknown

TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT4G21800

Predicted

Reconstituted Complex

FSW = 0.0602

Unknown

QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING
AT1G13580

Predicted

Phenotypic Enhancement

FSW = 0.1073

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G21370

Predicted

Phenotypic Enhancement

FSW = 0.0726

Unknown

UNKNOWN PROTEIN
AT1G26320

Predicted

Phenotypic Enhancement

FSW = 0.0532

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G74810

Predicted

Synthetic Lethality

FSW = 0.1547

Unknown

BOR5 ANION EXCHANGER
AT1G80710

Predicted

Phenotypic Enhancement

FSW = 0.0580

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G34750

Predicted

Phenotypic Enhancement

FSW = 0.0198

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.0354

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G59540Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0466

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G04800

Predicted

Phenotypic Enhancement

FSW = 0.0639

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G45620

Predicted

Phenotypic Enhancement

FSW = 0.0998

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G54940

Predicted

Phenotypic Enhancement

FSW = 0.0610

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G60550

Predicted

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

synthetic growth defect

FSW = 0.0744

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT5G49970

Predicted

Phenotypic Enhancement

FSW = 0.1108

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G59040

Predicted

Affinity Capture-MS

FSW = 0.0216

Unknown

COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G16740

Predicted

Phylogenetic profile method

FSW = 0.1026

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454