Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15680 - ( binding )
30 Proteins interacs with AT5G15680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10450 | PredictedAffinity Capture-MS | FSW = 0.0162
| Class C:plasma membrane | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G03920 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.0795
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT4G14350 | Predictedinteraction prediction | FSW = 0.0261
| Class C:plasma membrane | PROTEIN KINASE FAMILY PROTEIN |
AT1G12920 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Class C:plasma membrane | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT5G19330 | Predictedtwo hybrid | FSW = 0.0085
| Class C:plasma membrane | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT2G30710 | PredictedSynthetic Lethality | FSW = 0.0069
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT1G16970 | Predictedtwo hybridtwo hybrid | FSW = 0.0153
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0321
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G31720 | Predictedinteraction prediction | FSW = 0.0190
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G36010 | Predictedtwo hybridtwo hybrid | FSW = 0.0294
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G08730 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G53360 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0208
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT3G61790 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0285
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT2G07690 | Predictedtwo hybridtwo hybrid | FSW = 0.0110
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G19420 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT3G54180 | Predictedtwo hybrid | FSW = 0.0480
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G35750 | Predictedtwo hybrid | FSW = 0.0441
| Unknown | RHO-GTPASE-ACTIVATING PROTEIN-RELATED |
AT5G27620 | Predictedtwo hybridtwo hybrid | FSW = 0.0397
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G45190 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0794
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G47240 | Predictedtwo hybridtwo hybrid | FSW = 0.0522
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0751
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G61530 | Predictedtwo hybrid | FSW = 0.0731
| Unknown | SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN |
AT4G33080 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridSynthetic LethalityAffinity Capture-MS | FSW = 0.0508
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G10070 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G50960 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0269
| Unknown | NBP35 (NUCLEOTIDE BINDING PROTEIN 35) IRON-SULFUR CLUSTER BINDING / NUCLEOTIDE BINDING / PROTEIN HOMODIMERIZATION |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0043
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G10440 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | UNKNOWN PROTEIN |
AT1G49760 | Predictedinterologs mappinginteraction prediction | FSW = 0.0115
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G58040 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0173
| Unknown | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454