Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15840 - ( CO (CONSTANS) transcription factor/ transcription regulator/ zinc ion binding )

29 Proteins interacs with AT5G15840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G55920

Experimental

FSW = 0.0051

Class A:

nucleus

Class B:

plastid

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT2G42590

Experimental

FSW = 0.0136

Class A:

nucleus

Class B:

plasma membrane

peroxisome

cytosol

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G08970

Experimental

two hybrid

FSW = 0.0417

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

NF-YC9 (NUCLEAR FACTOR Y SUBUNIT C9) DNA BINDING / TRANSCRIPTION FACTOR
AT2G18915

Experimental

two hybrid

FSW = 0.0312

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G32950

Experimental

pull down

two hybrid

Reconstituted Complex

fluorescence acceptor donor pair

biochemical

in vitro

FSW = 0.1203

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G56170

Experimental

two hybrid

FSW = 0.0496

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G50470

Experimental

FSW = 0.0262

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YC7 (NUCLEAR FACTOR Y SUBUNIT C7) DNA BINDING / TRANSCRIPTION FACTOR
AT2G47810

Experimental

FSW = 0.1000

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YB5 (NUCLEAR FACTOR Y SUBUNIT B5) TRANSCRIPTION FACTOR
AT5G49230

Experimental

Phenotypic Enhancement

FSW = 0.0556

Class A:

nucleus

Class D:

nucleus (p = 0.78)

HRB1 (HYPERSENSITIVE TO RED AND BLUE) PROTEIN BINDING
AT3G48590

Experimental

coimmunoprecipitation

confocal microscopy

two hybrid

Reconstituted Complex

fluorescence acceptor donor pair

in vitro

FSW = 0.0992

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YC1 (NUCLEAR FACTOR Y SUBUNIT C1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G54830

Experimental

FSW = 0.1250

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YC3 (NUCLEAR FACTOR Y SUBUNIT C3) DNA BINDING / TRANSCRIPTION FACTOR
AT1G22770

Experimental

Dosage Growth Defect

FSW = 0.2695

Class A:

nucleus

Class D:

nucleus (p = 0.78)

GI (GIGANTEA)
AT5G47670

Experimental

FSW = 0.0334

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YB6 (NUCLEAR FACTOR Y SUBUNIT B6) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR
AT5G50490

Experimental

FSW = 0.0262

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YC5 (NUCLEAR FACTOR Y SUBUNIT C5) DNA BINDING / TRANSCRIPTION FACTOR
AT5G10030

Experimental

pull down

FSW = 0.0385

Class A:

nucleus

Class D:

nucleus (p = 0.78)

TGA4 (TGACG MOTIF-BINDING FACTOR 4) DNA BINDING / CALMODULIN BINDING / TRANSCRIPTION FACTOR
AT5G50480

Experimental

FSW = 0.1000

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YC6 (NUCLEAR FACTOR Y SUBUNIT C6) DNA BINDING / TRANSCRIPTION FACTOR
AT2G38880

Experimental

coimmunoprecipitation

confocal microscopy

two hybrid

Reconstituted Complex

fluorescence acceptor donor pair

in vitro

FSW = 0.0260

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR
AT1G21970

Experimental

FSW = 0.1250

Class A:

nucleus

Class D:

nucleus (p = 0.78)

LEC1 (LEAFY COTYLEDON 1) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G47640

Experimental

two hybrid

FSW = 0.1091

Class A:

nucleus

Class D:

nucleus (p = 0.78)

NF-YB2 (NUCLEAR FACTOR Y SUBUNIT B2) TRANSCRIPTION FACTOR
AT2G46340

Experimental

Reconstituted Complex

fluorescence acceptor donor pair

in vitro

FSW = 0.1290

Class A:

nucleus

Class D:

nucleus (p = 0.78)

SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER
AT3G11540

Experimental

Phenotypic Suppression

FSW = 0.1558

Class A:

nucleus

SPY (SPINDLY) PROTEIN N-ACETYLGLUCOSAMINYLTRANSFERASE/ PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G16050

Experimental

FSW = 0.0606

Class B:

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G24650

Experimental

two hybrid

FSW = 0.0334

Class D:

nucleus (p = 0.78)

ABI3 (ABA INSENSITIVE 3) DNA BINDING / BASAL TRANSCRIPTION REPRESSOR/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT2G25930

Experimental

Phenotypic Suppression

FSW = 0.1107

Class D:

nucleus (p = 0.78)

ELF3 (EARLY FLOWERING 3) PROTEIN C-TERMINUS BINDING / TRANSCRIPTION FACTOR
AT2G47700

Experimental

Phenotypic Suppression

FSW = 0.0539

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G77300

Experimental

Phenotypic Suppression

FSW = 0.1091

Unknown

EFS (EARLY FLOWERING IN SHORT DAYS) HISTONE METHYLTRANSFERASE(H3-K36 SPECIFIC) / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT4G11110

Experimental

Reconstituted Complex

in vitro

FSW = 0.2106

Unknown

SPA2 (SPA1-RELATED 2) PROTEIN BINDING / SIGNAL TRANSDUCER
AT3G15354

Experimental

Reconstituted Complex

in vitro

coimmunoprecipitation

FSW = 0.1947

Unknown

SPA3 (SPA1-RELATED 3) PROTEIN BINDING / SIGNAL TRANSDUCER
AT1G53090

Experimental

Reconstituted Complex

in vitro

FSW = 0.2050

Unknown

SPA4 (SPA1-RELATED 4) PROTEIN BINDING / SIGNAL TRANSDUCER

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454