Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G15840 - ( CO (CONSTANS) transcription factor/ transcription regulator/ zinc ion binding )
29 Proteins interacs with AT5G15840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G55920 | Experimental | FSW = 0.0051
| Class A:nucleusClass B:plastid | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT2G42590 | Experimental | FSW = 0.0136
| Class A:nucleusClass B:plasma membraneperoxisomecytosol | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G08970 | Experimentaltwo hybrid | FSW = 0.0417
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | NF-YC9 (NUCLEAR FACTOR Y SUBUNIT C9) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G18915 | Experimentaltwo hybrid | FSW = 0.0312
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G32950 | Experimentalpull downtwo hybridReconstituted Complexfluorescence acceptor donor pairbiochemicalin vitro | FSW = 0.1203
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G56170 | Experimentaltwo hybrid | FSW = 0.0496
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G50470 | Experimental | FSW = 0.0262
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YC7 (NUCLEAR FACTOR Y SUBUNIT C7) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G47810 | Experimental | FSW = 0.1000
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YB5 (NUCLEAR FACTOR Y SUBUNIT B5) TRANSCRIPTION FACTOR |
AT5G49230 | ExperimentalPhenotypic Enhancement | FSW = 0.0556
| Class A:nucleusClass D:nucleus (p = 0.78) | HRB1 (HYPERSENSITIVE TO RED AND BLUE) PROTEIN BINDING |
AT3G48590 | Experimentalcoimmunoprecipitationconfocal microscopytwo hybridReconstituted Complexfluorescence acceptor donor pairin vitro | FSW = 0.0992
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YC1 (NUCLEAR FACTOR Y SUBUNIT C1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G54830 | Experimental | FSW = 0.1250
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YC3 (NUCLEAR FACTOR Y SUBUNIT C3) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G22770 | ExperimentalDosage Growth Defect | FSW = 0.2695
| Class A:nucleusClass D:nucleus (p = 0.78) | GI (GIGANTEA) |
AT5G47670 | Experimental | FSW = 0.0334
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YB6 (NUCLEAR FACTOR Y SUBUNIT B6) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR |
AT5G50490 | Experimental | FSW = 0.0262
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YC5 (NUCLEAR FACTOR Y SUBUNIT C5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G10030 | Experimentalpull down | FSW = 0.0385
| Class A:nucleusClass D:nucleus (p = 0.78) | TGA4 (TGACG MOTIF-BINDING FACTOR 4) DNA BINDING / CALMODULIN BINDING / TRANSCRIPTION FACTOR |
AT5G50480 | Experimental | FSW = 0.1000
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YC6 (NUCLEAR FACTOR Y SUBUNIT C6) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38880 | Experimentalcoimmunoprecipitationconfocal microscopytwo hybridReconstituted Complexfluorescence acceptor donor pairin vitro | FSW = 0.0260
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT1G21970 | Experimental | FSW = 0.1250
| Class A:nucleusClass D:nucleus (p = 0.78) | LEC1 (LEAFY COTYLEDON 1) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G47640 | Experimentaltwo hybrid | FSW = 0.1091
| Class A:nucleusClass D:nucleus (p = 0.78) | NF-YB2 (NUCLEAR FACTOR Y SUBUNIT B2) TRANSCRIPTION FACTOR |
AT2G46340 | ExperimentalReconstituted Complexfluorescence acceptor donor pairin vitro | FSW = 0.1290
| Class A:nucleusClass D:nucleus (p = 0.78) | SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT3G11540 | ExperimentalPhenotypic Suppression | FSW = 0.1558
| Class A:nucleus | SPY (SPINDLY) PROTEIN N-ACETYLGLUCOSAMINYLTRANSFERASE/ PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G16050 | Experimental | FSW = 0.0606
| Class B:plasma membranenucleusClass D:nucleus (p = 0.78) | GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G24650 | Experimentaltwo hybrid | FSW = 0.0334
| Class D:nucleus (p = 0.78) | ABI3 (ABA INSENSITIVE 3) DNA BINDING / BASAL TRANSCRIPTION REPRESSOR/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G25930 | ExperimentalPhenotypic Suppression | FSW = 0.1107
| Class D:nucleus (p = 0.78) | ELF3 (EARLY FLOWERING 3) PROTEIN C-TERMINUS BINDING / TRANSCRIPTION FACTOR |
AT2G47700 | ExperimentalPhenotypic Suppression | FSW = 0.0539
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G77300 | ExperimentalPhenotypic Suppression | FSW = 0.1091
| Unknown | EFS (EARLY FLOWERING IN SHORT DAYS) HISTONE METHYLTRANSFERASE(H3-K36 SPECIFIC) / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT4G11110 | ExperimentalReconstituted Complexin vitro | FSW = 0.2106
| Unknown | SPA2 (SPA1-RELATED 2) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT3G15354 | ExperimentalReconstituted Complexin vitrocoimmunoprecipitation | FSW = 0.1947
| Unknown | SPA3 (SPA1-RELATED 3) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT1G53090 | ExperimentalReconstituted Complexin vitro | FSW = 0.2050
| Unknown | SPA4 (SPA1-RELATED 4) PROTEIN BINDING / SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454