Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16050 - ( GRF5 (GENERAL REGULATORY FACTOR 5) ATP binding / protein binding / protein phosphorylated amino acid binding )

14 Proteins interacs with AT5G16050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.1538

Class A:

plasma membrane

Class B:

vacuole

peroxisome

nucleus

cytosol

cytoskeleton

Class D:

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G42590

Experimental

FSW = 0.2971

Class A:

plasma membrane

Class B:

peroxisome

nucleus

cytosol

Class D:

cytosol (p = 0.67)

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35160

Experimental

FSW = 0.4024

Class A:

plasma membrane

Class B:

nucleus

cytosol

cytoskeleton

Class D:

cytosol (p = 0.67)

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G15840

Experimental

FSW = 0.0606

Class B:

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G16110

Experimental

two hybrid

FSW = 0.0588

Class D:

nucleus (p = 0.78)

ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G10450

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1979

Class C:

plasma membrane

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G09000

Predicted

Phylogenetic profile method

FSW = 0.7316

Class C:

plasma membrane

14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1)
AT3G02520

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2464

Class C:

plasma membrane

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G38480

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3400

Class C:

plasma membrane

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G22300

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3658

Class C:

plasma membrane

GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G65430

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1724

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G26480

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6036

Unknown

GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G34760

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6706

Unknown

GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G78220

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8942

Unknown

GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454