Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16150 - ( PGLCT (PLASTIDIC GLC TRANSLOCATOR) carbohydrate transmembrane transporter/ sugarhydrogen symporter )
43 Proteins interacs with AT5G16150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G61790 | Predictedin vivo | FSW = 0.0202
| Class C:plastid | CALNEXIN 1 (CNX1) |
AT1G77510 | Predictedin vivo | FSW = 0.0444
| Class C:plastid | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
AT5G09590 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0496
| Class C:plastid | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G20550 | PredictedAffinity Capture-MS | FSW = 0.0249
| Class C:plastid | DDL (DAWDLE) |
AT1G19660 | Predictedtwo hybrid | FSW = 0.0132
| Class C:plastid | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G10070 | Predictedbiochemical | FSW = 0.0207
| Class C:plastid | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G57050 | PredictedAffinity Capture-Western | FSW = 0.0686
| Class C:plastid | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT3G04120 | Predictedin vitro | FSW = 0.0079
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT4G01840 | PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT4G32360 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2445
| Unknown | NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE |
AT1G08450 | Predictedin vivo | FSW = 0.0479
| Unknown | CRT3 (CALRETICULIN 3) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT5G47510 | Predictedsynthetic growth defect | FSW = 0.0351
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G47960 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G43900 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT1G79020 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G18600 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G47510 | Predictedtwo hybrid | FSW = 0.0212
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT3G49920 | PredictedPhenotypic Enhancement | FSW = 0.0333
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT1G29330 | PredictedAffinity Capture-Western | FSW = 0.0360
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT3G08730 | Predictedin vitro | FSW = 0.0033
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63960 | PredictedAffinity Capture-Western | FSW = 0.0165
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G09230 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT3G57870 | Predictedin vivotwo hybrid | FSW = 0.0175
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT4G05520 | PredictedAffinity Capture-Western | FSW = 0.0497
| Unknown | ATEHD2 (EPS15 HOMOLOGY DOMAIN 2) GTP BINDING / GTPASE/ CALCIUM ION BINDING |
AT5G48700 | Predictedin vivo | FSW = 0.0284
| Unknown | UBIQUITIN-RELATED |
AT5G49310 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0074
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT1G49520 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.0547
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G66510 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0383
| Unknown | AAR2 PROTEIN FAMILY |
AT3G06460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0572
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G13720 | PredictedSynthetic Lethality | FSW = 0.0319
| Unknown | PRA8 |
AT3G29070 | PredictedReconstituted Complextwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0284
| Unknown | PROTEIN TRANSMEMBRANE TRANSPORTER |
AT4G32850 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0434
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G13150 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT1G10210 | Predictedbiochemical | FSW = 0.0143
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G11510 | PredictedSynthetic Lethality | FSW = 0.0175
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G26320 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G44190 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1893
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT3G53030 | PredictedAffinity Capture-Western | FSW = 0.0377
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G30100 | PredictedSynthetic Lethality | FSW = 0.0696
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT5G05070 | PredictedSynthetic Lethality | FSW = 0.0567
| Unknown | ZINC ION BINDING |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0095
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G05030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0105
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454