Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G16170 - ( unknown protein )
63 Proteins interacs with AT5G16170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | Predictedsynthetic growth defect | FSW = 0.0703
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G47520 | Predictedsynthetic growth defect | FSW = 0.0549
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G09720 | Predictedsynthetic growth defect | FSW = 0.0059
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT4G29210 | Predictedsynthetic growth defect | FSW = 0.0808
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT5G09660 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2418
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G58610 | PredictedPhenotypic Enhancement | FSW = 0.2302
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.0268
| Unknown | SELENOPROTEIN-RELATED |
AT3G45780 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0046
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G04340 | PredictedPhenotypic Enhancement | FSW = 0.0728
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G47700 | Predictedsynthetic growth defect | FSW = 0.0613
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT1G04750 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1790
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G65930 | Predictedsynthetic growth defect | FSW = 0.0242
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G03860 | PredictedSynthetic Lethality | FSW = 0.0523
| Unknown | MLS (MALATE SYNTHASE) MALATE SYNTHASE |
AT2G44680 | Predictedsynthetic growth defect | FSW = 0.0493
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G21700 | PredictedPhenotypic Enhancementsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1559
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G20440 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT4G31720 | Predictedsynthetic growth defect | FSW = 0.0098
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0494
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G47630 | Predictedsynthetic growth defect | FSW = 0.0326
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G19140 | Predictedsynthetic growth defect | FSW = 0.0856
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUINONE BIOSYNTHETIC PROCESS LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COQ9 (INTERPROIPR013718) UBIQUINONE BIOSYNTHESIS PROTEIN COQ9 (INTERPROIPR012762) HAS 598 BLAST HITS TO 598 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 149 METAZOA - 114 FUNGI - 60 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT4G26910 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0264
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0553
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G13900 | PredictedPhenotypic Enhancement | FSW = 0.1272
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT2G24040 | Predictedsynthetic growth defect | FSW = 0.0065
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G10980 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G15240 | PredictedSynthetic Lethality | FSW = 0.0537
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.2050
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G21370 | Predictedsynthetic growth defect | FSW = 0.0985
| Unknown | UNKNOWN PROTEIN |
AT1G21900 | Predictedsynthetic growth defect | FSW = 0.0299
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G25155 | PredictedPhenotypic Enhancement | FSW = 0.2067
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G25500 | Predictedsynthetic growth defect | FSW = 0.0791
| Unknown | CHOLINE TRANSPORTER-RELATED |
AT1G27080 | Predictedsynthetic growth defect | FSW = 0.0867
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G35350 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.2302
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G44180 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.1707
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G47830 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2660
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66590 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2716
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1563
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.0531
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G03040 | PredictedSynthetic Lethality | FSW = 0.0098
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G03250 | Predictedsynthetic growth defect | FSW = 0.2251
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G24960 | Predictedsynthetic growth defect | FSW = 0.1399
| Unknown | UNKNOWN PROTEIN |
AT2G25280 | Predictedsynthetic growth defect | FSW = 0.1778
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MEDIATOR OF ERBB2-DRIVEN CELL MOTILITY (MEMO) RELATED (INTERPROIPR002737) HAS 742 BLAST HITS TO 742 PROTEINS IN 323 SPECIES ARCHAE - 138 BACTERIA - 240 METAZOA - 132 FUNGI - 82 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 124 (SOURCE NCBI BLINK) |
AT3G18660 | Predictedsynthetic growth defect | FSW = 0.1549
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2395
| Unknown | UNKNOWN PROTEIN |
AT3G22860 | Predictedsynthetic growth defect | FSW = 0.0296
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT3G60240 | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G21490 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2319
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G22140 | Predictedsynthetic growth defect | FSW = 0.1009
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G23420 | Predictedsynthetic growth defect | FSW = 0.0084
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G27130 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2261
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2562
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.2081
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT1G06830 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | UNKNOWN PROTEIN |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0765
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G32160 | PredictedPhenotypic Enhancement | FSW = 0.0672
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT5G16980 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.2584
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17860 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2048
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G39400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0414
| Unknown | PTEN1 PHOSPHATASE |
AT5G45620 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2712
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G19150 | Predictedsynthetic growth defect | FSW = 0.0142
| Unknown | CARBOHYDRATE KINASE FAMILY |
ATCG00905 | PredictedPhenotypic Enhancement | FSW = 0.0557
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT3G21310 | PredictedPhylogenetic profile method | FSW = 0.0144
| Unknown | UNKNOWN PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454