Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16420 - ( pentatricopeptide (PPR) repeat-containing protein )

14 Proteins interacs with AT5G16420
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02090

Predicted

Gene fusion method

FSW = 0.0248

Unknown

MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT3G63130

Predicted

Gene fusion method

FSW = 0.0488

Unknown

RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING
AT5G12480

Predicted

Gene fusion method

FSW = 0.0095

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G24510

Predicted

Gene fusion method

FSW = 0.0936

Unknown

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT3G27640

Predicted

Gene fusion method

FSW = 0.1000

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G02530

Predicted

Gene fusion method

FSW = 0.1111

Unknown

CHAPERONIN PUTATIVE
AT1G01190

Predicted

Gene fusion method

FSW = 0.0410

Unknown

CYP78A8 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT1G68270

Predicted

Gene fusion method

FSW = 0.0554

Unknown

AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN
AT5G16070

Predicted

Gene fusion method

FSW = 0.1981

Unknown

CHAPERONIN PUTATIVE
AT5G50140

Predicted

Gene fusion method

FSW = 0.2857

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT5G54570Predicted

Gene fusion method

FSW = 0.0702

Unknown

BGLU41 (BETA GLUCOSIDASE 41) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT4G21760

Predicted

Gene fusion method

FSW = 0.0702

Unknown

BGLU47 (BETA-GLUCOSIDASE 47) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT3G01090

Predicted

Gene fusion method

FSW = 0.0080

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT1G75940

Predicted

Gene fusion method

FSW = 0.0702

Unknown

ATA27 CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454