Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G16640 - ( pentatricopeptide (PPR) repeat-containing protein )

21 Proteins interacs with AT5G16640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G22200

Predicted

Gene fusion method

FSW = 0.0775

Unknown

POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) 4-AMINOBUTYRATE TRANSAMINASE/ 4-AMINOBUTYRATEPYRUVATE TRANSAMINASE
AT1G13110

Predicted

Gene fusion method

FSW = 0.1109

Unknown

CYP71B7 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT1G77210

Predicted

Gene fusion method

FSW = 0.0244

Unknown

SUGAR TRANSPORTER PUTATIVE
AT2G30260

Predicted

two hybrid

FSW = 0.0379

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G05410

Predicted

Gene fusion method

FSW = 0.0524

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G76860

Predicted

two hybrid

FSW = 0.0175

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G27680

Predicted

two hybrid

FSW = 0.0513

Unknown

MSP1 PROTEIN PUTATIVE / INTRAMITOCHONDRIAL SORTING PROTEIN PUTATIVE
AT1G02410

Predicted

Phenotypic Suppression

FSW = 0.0556

Unknown

CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG / COX11 FAMILY
AT3G13550

Predicted

two hybrid

FSW = 0.0148

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G14640

Predicted

two hybrid

FSW = 0.0148

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0223

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0160

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0205

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G05600

Predicted

Gene fusion method

Co-expression

FSW = 0.1634

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT2G17033

Predicted

Gene fusion method

Co-expression

FSW = 0.1109

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT4G33060

Predicted

Gene fusion method

FSW = 0.0683

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT3G26280

Predicted

Gene fusion method

FSW = 0.1109

Unknown

CYP71B4 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT3G28660

Predicted

Gene fusion method

FSW = 0.2518

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G79630

Predicted

Gene fusion method

FSW = 0.0324

Unknown

PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN
AT1G03840

Predicted

Gene fusion method

FSW = 0.3906

Unknown

MGP (MAGPIE) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT4G25220

Predicted

Gene fusion method

FSW = 0.0368

Unknown

TRANSPORTER PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454