Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16830 - ( SYP21 (SYNTAXIN OF PLANTS 21) SNAP receptor )
16 Proteins interacs with AT5G16830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G39510 | Experimentalinteraction detection methodelectron microscopyAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.4672
| Class A:vacuoleendoplasmic reticulumClass B:golgiClass D:nucleus (p = 0.78)mitochondrion (p = 0.82)golgi (p = 0.04) | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT5G46860 | Experimental | FSW = 0.2963
| Class A:vacuoleendoplasmic reticulumClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | VAM3 SNAP RECEPTOR |
AT3G52850 | Experimental | FSW = 0.2250
| Class A:vacuoleClass B:uncleargolgiendoplasmic reticulum | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) AMINO-TERMINAL VACUOLAR SORTING PROPEPTIDE BINDING |
AT1G16240 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0797
| Class A:vacuoleClass B:nucleusendoplasmic reticulumClass D:plastid (p = 0.78)nucleus (p = 0.78)golgi (p = 0.04) | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT1G79590 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.2351
| Class A:vacuoleClass B:endoplasmic reticulumClass D:plastid (p = 0.78)nucleus (p = 0.78)golgi (p = 0.04) | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT2G38020 | ExperimentalAffinity Capture-Western | FSW = 0.2917
| Class A:vacuoleClass B:endoplasmic reticulumClass D:mitochondrion (p = 0.82) | VCL1 (VACUOLELESS 1) |
AT1G28490 | Experimentalsplit-reporter assay | FSW = 0.2179
| Class A:endoplasmic reticulumClass B:vacuolegolgiClass D:golgi (p = 0.04) | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT2G35190 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0410
| Class B:vacuoleplasma membraneendoplasmic reticulumClass D:nucleus (p = 0.78)golgi (p = 0.04) | NPSN11 (NOVEL PLANT SNARE 11) SNAP RECEPTOR/ PROTEIN TRANSPORTER |
AT4G17730 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0443
| Class C:vacuole | SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR |
AT3G56190 | Predictedin vitroin vitroin vitroAffinity Capture-MS | FSW = 0.0698
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT5G61210 | Predictedin vivoin vitro | FSW = 0.1172
| Unknown | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING |
AT2G05170 | Predictedin vivo | FSW = 0.0614
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G15850 | Predictedtwo hybrid | FSW = 0.1684
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G07120 | Predictedtwo hybrid | FSW = 0.0842
| Unknown | SNX2B (SORTING NEXIN 2B) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT5G12210 | Predictedtwo hybrid | FSW = 0.0750
| Unknown | GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE |
AT1G12470 | PredictedAffinity Capture-MSin vivo | FSW = 0.1775
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454