Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16830 - ( SYP21 (SYNTAXIN OF PLANTS 21) SNAP receptor )

16 Proteins interacs with AT5G16830
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G39510

Experimental

interaction detection method

electron microscopy

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.4672

Class A:

vacuole

endoplasmic reticulum

Class B:

golgi

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

golgi (p = 0.04)

SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR
AT5G46860

Experimental

FSW = 0.2963

Class A:

vacuole

endoplasmic reticulum

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

VAM3 SNAP RECEPTOR
AT3G52850

Experimental

FSW = 0.2250

Class A:

vacuole

Class B:

unclear

golgi

endoplasmic reticulum

VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) AMINO-TERMINAL VACUOLAR SORTING PROPEPTIDE BINDING
AT1G16240

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0797

Class A:

vacuole

Class B:

nucleus

endoplasmic reticulum

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

golgi (p = 0.04)

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT1G79590

Experimental

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.2351

Class A:

vacuole

Class B:

endoplasmic reticulum

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

golgi (p = 0.04)

SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT2G38020

Experimental

Affinity Capture-Western

FSW = 0.2917

Class A:

vacuole

Class B:

endoplasmic reticulum

Class D:

mitochondrion (p = 0.82)

VCL1 (VACUOLELESS 1)
AT1G28490

Experimental

split-reporter assay

FSW = 0.2179

Class A:

endoplasmic reticulum

Class B:

vacuole

golgi

Class D:

golgi (p = 0.04)

SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT2G35190

Experimental

Affinity Capture-Western

affinity technology

FSW = 0.0410

Class B:

vacuole

plasma membrane

endoplasmic reticulum

Class D:

nucleus (p = 0.78)

golgi (p = 0.04)

NPSN11 (NOVEL PLANT SNARE 11) SNAP RECEPTOR/ PROTEIN TRANSPORTER
AT4G17730

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0443

Class C:

vacuole

SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR
AT3G56190

Predicted

in vitro

in vitro

in vitro

Affinity Capture-MS

FSW = 0.0698

Class C:

vacuole

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT5G61210

Predicted

in vivo

in vitro

FSW = 0.1172

Unknown

SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING
AT2G05170

Predicted

in vivo

FSW = 0.0614

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT1G15850

Predicted

two hybrid

FSW = 0.1684

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G07120

Predicted

two hybrid

FSW = 0.0842

Unknown

SNX2B (SORTING NEXIN 2B) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT5G12210

Predicted

two hybrid

FSW = 0.0750

Unknown

GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE
AT1G12470

Predicted

Affinity Capture-MS

in vivo

FSW = 0.1775

Unknown

PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454