Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16870 - ( aminoacyl-tRNA hydrolase )
18 Proteins interacs with AT5G16870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01370 | Predictedbiochemical | FSW = 0.0075
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT2G27710 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0123
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT1G12310 | Predictedtwo hybrid | FSW = 0.0155
| Unknown | CALMODULIN PUTATIVE |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT3G12480 | Predictedtwo hybridtwo hybrid | FSW = 0.0195
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G79650 | Predictedtwo hybrid | FSW = 0.1739
| Unknown | RAD23 DAMAGED DNA BINDING |
AT1G16190 | Predictedtwo hybrid | FSW = 0.0548
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G58290 | PredictedAffinity Capture-Western | FSW = 0.0720
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G38470 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0588
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G05730 | Predictedtwo hybrid | FSW = 0.2319
| Unknown | UNKNOWN PROTEIN |
AT2G43720 | Predictedtwo hybrid | FSW = 0.2319
| Unknown | UNKNOWN PROTEIN |
AT3G05070 | Predictedtwo hybridtwo hybrid | FSW = 0.0635
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MRNA SPLICING FACTOR CWF18 (INTERPROIPR013169) HAS 221 BLAST HITS TO 221 PROTEINS IN 113 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 107 FUNGI - 54 PLANTS - 17 VIRUSES - 9 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT4G08320 | Predictedtwo hybridtwo hybrid | FSW = 0.0152
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G33945 | Predictedtwo hybridtwo hybrid | FSW = 0.1088
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G40040 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E) |
AT2G17190 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1016
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT2G31725 | Predictedtwo hybrid | FSW = 0.2140
| Unknown | UNKNOWN PROTEIN |
AT3G03010 | PredictedPhylogenetic profile method | FSW = 0.0356
| Unknown | AMINOACYL-TRNA HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454