Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G16960 - ( NADP-dependent oxidoreductase putative )

43 Proteins interacs with AT5G16960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G01280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4194

Unknown

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT1G14010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5824

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G09820

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.4464

Unknown

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT1G16880

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

FSW = 0.2939

Unknown

URIDYLYLTRANSFERASE-RELATED
AT1G18870

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.4251

Unknown

ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT4G08690

Predicted

Affinity Capture-MS

FSW = 0.5177

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G04720

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2358

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G45380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5807

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT3G46900

Predicted

Affinity Capture-MS

FSW = 0.3493

Unknown

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G16990

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3826

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G48130

Predicted

interologs mapping

FSW = 0.0784

Unknown

ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE
AT4G14340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3769

Unknown

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G16970

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4000

Unknown

AT-AER (ALKENAL REDUCTASE) 2-ALKENAL REDUCTASE
AT5G59960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5476

Unknown

UNKNOWN PROTEIN
AT1G30810

Predicted

Affinity Capture-MS

FSW = 0.5944

Unknown

TRANSCRIPTION FACTOR
AT3G08980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.6490

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT2G38960

Predicted

Affinity Capture-MS

FSW = 0.2979

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.1372

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G06790

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3683

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G27040

Predicted

Affinity Capture-MS

FSW = 0.0509

Unknown

NITRATE TRANSPORTER PUTATIVE
AT1G74250

Predicted

Affinity Capture-MS

FSW = 0.4314

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G20410

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4634

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G29940

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5518

Unknown

PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G31060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.4112

Unknown

ELONGATION FACTOR FAMILY PROTEIN
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0170

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT3G05760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4383

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT4G28470

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1538

Unknown

RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR
AT4G29910

Predicted

Affinity Capture-MS

FSW = 0.3630

Unknown

ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G06150

Predicted

Affinity Capture-MS

FSW = 0.0804

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G27080

Predicted

Affinity Capture-MS

FSW = 0.2000

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT2G29680

Predicted

Affinity Capture-MS

FSW = 0.3877

Unknown

CDC6 (CELL DIVISION CONTROL 6)
AT3G52590Predicted

Affinity Capture-MS

FSW = 0.3731

Unknown

UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G53880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3801

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G31770

Predicted

Affinity Capture-MS

FSW = 0.4251

Unknown

CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT5G59890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4365

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT5G37980

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4000

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G59845

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2707

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G26320

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0800

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G65560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3667

Unknown

ALLYL ALCOHOL DEHYDROGENASE PUTATIVE
AT3G03080

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1913

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17000

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1146

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G37940

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.4000

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G38000

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.4000

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454