Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16960 - ( NADP-dependent oxidoreductase putative )
43 Proteins interacs with AT5G16960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4194
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5824
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4464
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G16880 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.2939
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT1G18870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.4251
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.5177
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2358
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5807
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.3493
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G16990 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3826
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G48130 | Predictedinterologs mapping | FSW = 0.0784
| Unknown | ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE |
AT4G14340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3769
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G16970 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4000
| Unknown | AT-AER (ALKENAL REDUCTASE) 2-ALKENAL REDUCTASE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5476
| Unknown | UNKNOWN PROTEIN |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.5944
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.6490
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G38960 | PredictedAffinity Capture-MS | FSW = 0.2979
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.1372
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3683
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G27040 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G74250 | PredictedAffinity Capture-MS | FSW = 0.4314
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4634
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5518
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G31060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4112
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4383
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT4G28470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1538
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.3630
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0804
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G27080 | PredictedAffinity Capture-MS | FSW = 0.2000
| Unknown | NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT2G29680 | PredictedAffinity Capture-MS | FSW = 0.3877
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.3731
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3801
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G31770 | PredictedAffinity Capture-MS | FSW = 0.4251
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G59890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4365
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT5G37980 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4000
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G59845 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2707
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G26320 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0800
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G65560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3667
| Unknown | ALLYL ALCOHOL DEHYDROGENASE PUTATIVE |
AT3G03080 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1913
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17000 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1146
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G37940 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4000
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G38000 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4000
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454