Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G16980 - ( NADP-dependent oxidoreductase putative )
96 Proteins interacs with AT5G16980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01250 | Predictedtwo hybrid | FSW = 0.0064
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G17360 | PredictedPhenotypic Suppression | FSW = 0.1218
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G47520 | Predictedsynthetic growth defect | FSW = 0.0383
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G16660 | Predictedsynthetic growth defect | FSW = 0.2801
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.2025
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G45170 | PredictedAffinity Capture-MS | FSW = 0.0934
| Unknown | ATATG8E MICROTUBULE BINDING |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0650
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G13450 | PredictedPhenotypic Enhancement | FSW = 0.1208
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT3G22890 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2410
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.2266
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G58610 | Predictedsynthetic growth defect | FSW = 0.2104
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT5G54770 | Predictedinterologs mappinginterologs mappingPhenotypic EnhancementPhenotypic Enhancementinterologs mappingPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinterologs mapping | FSW = 0.1536
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT3G56160 | PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.1648
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0980
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G15450 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1939
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10070 | Predictedsynthetic growth defect | FSW = 0.0480
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.2292
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G27450 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0813
| Unknown | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT1G04750 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3680
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0855
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G49370 | PredictedPhenotypic Enhancement | FSW = 0.0938
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G18800 | PredictedPhenotypic Enhancement | FSW = 0.1629
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT1G21700 | Predictedsynthetic growth defectPhenotypic EnhancementAffinity Capture-Westernsynthetic growth defectPhenotypic Enhancement | FSW = 0.2800
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G09800 | PredictedAffinity Capture-Western | FSW = 0.1449
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34440 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT1G56110 | PredictedPhenotypic Enhancement | FSW = 0.0348
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.2538
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0348
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G64880 | PredictedSynthetic Lethality | FSW = 0.1610
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT4G30320 | Predictedsynthetic growth defect | FSW = 0.0240
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.2417
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G07140 | Predictedsynthetic growth defect | FSW = 0.1425
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT2G05170 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1482
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G17810 | PredictedPhenotypic Suppression | FSW = 0.0140
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G02560 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0659
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT1G62800 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2352
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G13900 | PredictedPhenotypic EnhancementPhenotypic EnhancementColocalization | FSW = 0.1237
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G05180 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2017
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT4G17190 | Predictedsynthetic growth defect | FSW = 0.2009
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G10210 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1175
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.1982
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G20693 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3296
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G21370 | Predictedsynthetic growth defect | FSW = 0.2402
| Unknown | UNKNOWN PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.2795
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26690 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2487
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.1440
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G35350 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.4017
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G44180 | Predictedsynthetic growth defect | FSW = 0.2884
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G60680 | Predictedsynthetic growth defect | FSW = 0.1427
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66590 | Predictedsynthetic growth defectAffinity Capture-WesternSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancementtwo hybrid | FSW = 0.3770
| Unknown | COX19 FAMILY PROTEIN |
AT1G68020 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1846
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.2642
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G03250 | Predictedsynthetic growth defect | FSW = 0.2358
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G19570 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | CDA1 (CYTIDINE DEAMINASE 1) CYTIDINE DEAMINASE |
AT2G24960 | Predictedsynthetic growth defect | FSW = 0.1981
| Unknown | UNKNOWN PROTEIN |
AT2G30800 | PredictedAffinity Capture-Westerntwo hybridsynthetic growth defect | FSW = 0.0996
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.1102
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT3G02320 | PredictedSynthetic Lethality | FSW = 0.2028
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G06470 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G11230 | Predictedsynthetic growth defect | FSW = 0.2363
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G18660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1432
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G21460 | PredictedSynthetic Lethality | FSW = 0.1688
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G22290 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.4497
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.2935
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.3437
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.1482
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G45240 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3437
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47290 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2492
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G53030 | PredictedSynthetic Lethality | FSW = 0.2500
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G21490 | PredictedColocalizationtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybridColocalizationco-fractionationCo-fractionationSynthetic RescueSynthetic LethalityAffinity Capture-MSReconstituted ComplexCo-purificationPhenotypic Suppression | FSW = 0.5670
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G22140 | Predictedsynthetic growth defect | FSW = 0.0803
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G24160 | PredictedPhenotypic Suppression | FSW = 0.1362
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT4G27130 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.4698
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | Predictedsynthetic growth defect | FSW = 0.3300
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.3453
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G16170 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defect | FSW = 0.2584
| Unknown | UNKNOWN PROTEIN |
AT1G07820 | PredictedPhenotypic Enhancement | FSW = 0.0624
| Unknown | HISTONE H4 |
AT1G10090 | Predictedsynthetic growth defect | FSW = 0.1339
| Unknown | UNKNOWN PROTEIN |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.2375
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G55060 | PredictedSynthetic Lethality | FSW = 0.1070
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.2488
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G55810 | PredictedSynthetic Lethality | FSW = 0.0251
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.2556
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.1560
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G47610 | PredictedSynthetic Lethality | FSW = 0.2358
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G54490 | Predictedtwo hybrid | FSW = 0.0467
| Unknown | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G15410 | PredictedPhenotypic Enhancement | FSW = 0.1108
| Unknown | PUX5 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B PRIME GAMMA) PROTEIN BINDING |
AT5G01330 | Predictedsynthetic growth defect | FSW = 0.0277
| Unknown | PDC3 (PYRUVATE DECARBOXYLASE-3) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING / TRANSFERASE |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.1480
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G20340 | Predictedsynthetic growth defect | FSW = 0.2807
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G45620 | Predictedsynthetic growth defect | FSW = 0.4384
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G60340 | PredictedAffinity Capture-MS | FSW = 0.0498
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G17860 | PredictedPhenotypic Enhancement | FSW = 0.3715
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.2208
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G49970 | Predictedsynthetic growth defect | FSW = 0.2688
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1912
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454