Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G17000 - ( NADP-dependent oxidoreductase putative )
103 Proteins interacs with AT5G17000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.1319
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT2G42740 | PredictedSynthetic Lethality | FSW = 0.0071
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2263
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT2G01250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1825
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2086
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.1162
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G24770 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G26590 | Predictedbiochemical | FSW = 0.0340
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2764
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1675
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT2G22780 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0819
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.3595
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G74710 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3584
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3129
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G21640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2248
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.2024
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT5G14320 | PredictedCo-purification | FSW = 0.0087
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2529
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.1344
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.2102
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2864
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2809
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.2655
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT1G04750 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0880
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2839
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2563
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G59740 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2424
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G53870 | Predictedbiochemical | FSW = 0.0202
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G35310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3285
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G16990 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1769
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G16970 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.1754
| Unknown | AT-AER (ALKENAL REDUCTASE) 2-ALKENAL REDUCTASE |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1939
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT4G13980 | Predictedbiochemical | FSW = 0.0233
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G44500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1543
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.1566
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2991
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.1946
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.1425
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.1262
| Unknown | BINDING |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.1882
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33730 | Predictedbiochemical | FSW = 0.0017
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G01510 | PredictedAffinity Capture-MS | FSW = 0.0494
| Unknown | ARV2 |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1712
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3163
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G49060 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G27550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1419
| Unknown | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0890
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2448
| Unknown | UNKNOWN PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | UNKNOWN PROTEIN |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3540
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5354
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.1501
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3086
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.1400
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2167
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.1590
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2248
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3357
| Unknown | HISTONE H4 |
AT4G10480 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2415
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2353
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G05785 | PredictedAffinity Capture-MS | FSW = 0.0562
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G06090 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0285
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0647
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1039
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1543
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.1919
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G70290 | Predictedbiochemical | FSW = 0.0131
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.2850
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.2650
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.3367
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.1094
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3350
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2685
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G01860 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0390
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.3507
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.1357
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1901
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1945
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G44635 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G44740 | Predictedbiochemical | FSW = 0.0027
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2571
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G60870 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0662
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1397
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.3266
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.2178
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G16960 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1146
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G37980 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1913
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G38000 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1913
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G37940 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1913
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G65560 | PredictedPhylogenetic profile method | FSW = 0.1754
| Unknown | ALLYL ALCOHOL DEHYDROGENASE PUTATIVE |
AT3G59845 | PredictedPhylogenetic profile method | FSW = 0.1137
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G26320 | PredictedPhylogenetic profile method | FSW = 0.0663
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G03080 | PredictedPhylogenetic profile method | FSW = 0.1204
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454