Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G17020 - ( XPO1A protein binding / protein transporter/ receptor )
30 Proteins interacs with AT5G17020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G34460 | Experimentalconfocal microscopy | FSW = 0.0139
| Class A:nucleusClass B:plasma membranegolgicytosolClass D:extracellular (p = 0.86) | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G23430 | Experimental | FSW = 0.0156
| Class A:nucleusClass D:cytosol (p = 0.67) | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G26300 | Experimentalgtpase assay | FSW = 0.0193
| Class B:plasma membranenucleusClass D:cytosol (p = 0.67) | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT5G23405 | Experimental | FSW = 0.1212
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT5G20020 | PredictedAffinity Capture-Westernin vitro | FSW = 0.1095
| Class C:nucleus | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G22220 | Predictedin vitroin vivo | FSW = 0.0189
| Class C:nucleus | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G58590 | Predictedin vitro | FSW = 0.1323
| Class C:nucleus | RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING |
AT4G24880 | Predictedin vivoin vitro | FSW = 0.0963
| Class C:nucleus | UNKNOWN PROTEIN |
AT3G17590 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0208
| Class C:nucleus | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT5G12470 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0970
| Unknown | UNKNOWN PROTEIN |
AT5G63110 | PredictedAffinity Capture-Western | FSW = 0.0044
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G26630 | Predictedin vitro | FSW = 0.0481
| Unknown | FBR12 (FUMONISIN B1-RESISTANT12) TRANSLATION INITIATION FACTOR |
AT1G08680 | Predictedin vitrotwo hybrid | FSW = 0.0814
| Unknown | ZIGA4 (ARF GAP-LIKE ZINC FINGER-CONTAINING PROTEIN ZIGA4) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G50690 | Predictedin vitroin vivo | FSW = 0.0606
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT5G47480 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | UNKNOWN PROTEIN |
AT1G01760 | Predictedin vitroin vivo | FSW = 0.0539
| Unknown | RNA BINDING / ADENOSINE DEAMINASE |
AT3G15970 | Predictedin vitroin vivoin vitroin vivotwo hybrid | FSW = 0.1441
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT3G49650 | Predictedin vivotwo hybrid | FSW = 0.0194
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G61710 | Predictedin vitroin vivo | FSW = 0.0623
| Unknown | AUTOPHAGY PROTEIN APG6 FAMILY |
AT4G11790 | Predictedin vitroin vivo | FSW = 0.1662
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT4G12620 | Predictedin vitroin vivo | FSW = 0.0179
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G13350 | Predictedin vitrotwo hybrid | FSW = 0.0404
| Unknown | NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE) GTP BINDING / GTPASE |
AT5G16040 | Predictedin vitro | FSW = 0.0341
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G16850 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0202
| Unknown | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE |
AT1G13950 | Predictedin vitro | FSW = 0.0183
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT2G03820 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0230
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT2G45000 | Predictedin vivoin vitro | FSW = 0.0135
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G55190 | PredictedAffinity Capture-Westernin vitro | FSW = 0.0638
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G03110 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1148
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454