Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G17440 - ( LUC7 N_terminus domain-containing protein )

14 Proteins interacs with AT5G17440
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10450

Predicted

Affinity Capture-MS

FSW = 0.0179

Unknown

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0623

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT4G30310

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3117

Unknown

RIBITOL KINASE PUTATIVE
AT3G18790

Predicted

Phenotypic Suppression

FSW = 0.0749

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT5G19450

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Phenotypic Enhancement

Affinity Capture-Western

Phenotypic Enhancement

co-fractionation

Co-fractionation

synthetic growth defect

FSW = 0.1980

Unknown

CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G59830

Predicted

Affinity Capture-MS

FSW = 0.0304

Unknown

PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G56090

Predicted

interologs mapping

FSW = 0.2273

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT3G11520

Predicted

Phenotypic Enhancement

FSW = 0.1176

Unknown

CYCB13 (CYCLIN B13) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G14390

Predicted

Affinity Capture-MS

FSW = 0.2743

Unknown

DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE
AT4G19003

Predicted

interologs mapping

FSW = 0.0822

Unknown

VPS25
AT1G20693

Predicted

synthetic growth defect

FSW = 0.0290

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.0582

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT5G67290

Predicted

Synthetic Lethality

FSW = 0.1773

Unknown

FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454