Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G17550 - ( PEX19-2 )
26 Proteins interacs with AT5G17550| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G39970
   | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0920
| Class C:peroxisome | PEROXISOMAL MEMBRANE PROTEIN (PMP36) |
| AT5G62810
| Predictedtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.1214
| Class C:peroxisome | PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER |
| AT1G16970
| PredictedAffinity Capture-MS | FSW = 0.0081
| Class C:peroxisome | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
| AT2G26350
| Predictedin vivoin vitroAffinity Capture-MStwo hybrid | FSW = 0.1736
| Class C:peroxisome | PEX10 PROTEIN BINDING / ZINC ION BINDING |
| AT3G07560
| Predictedtwo hybridtwo hybridin vivoin vitro | FSW = 0.0898
| Class C:peroxisome | PEX13 (PEROXIN 13) PROTEIN BINDING |
| AT1G79810
| Predictedtwo hybrid | FSW = 0.2294
| Class C:peroxisome | TED3 (REVERSAL OF THE DET PHENOTYPE 3) PROTEIN BINDING / ZINC ION BINDING |
| AT3G04460
| Predictedtwo hybridin vivoin vitrotwo hybrid | FSW = 0.0543
| Class C:peroxisome | PEX12 PROTEIN BINDING / ZINC ION BINDING |
| AT5G56290
| Predictedtwo hybrid | FSW = 0.1143
| Class C:peroxisome | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
| AT4G39850
| Predictedtwo hybridin vitroin vivotwo hybridin vitroin vivotwo hybridin vitroin vivoAffinity Capture-MSin vivoin vitrotwo hybrid | FSW = 0.0345
| Class C:peroxisome | PXA1 (PEROXISOMAL ABC TRANSPORTER 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G45690
| Predictedtwo hybridtwo hybridin vitroin vitroAffinity Capture-MS | FSW = 0.1379
| Class C:peroxisome | SSE1 (SHRUNKEN SEED 1) |
| AT5G40890
| Predictedtwo hybrid | FSW = 0.0345
| Unknown | ATCLC-A (CHLORIDE CHANNEL A) ANION CHANNEL/ NITRATE TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED CHLORIDE CHANNEL |
| AT5G22500
| Predictedtwo hybrid | FSW = 0.0315
| Unknown | FAR1 (FATTY ACID REDUCTASE 1) FATTY ACYL-COA REDUCTASE (ALCOHOL-FORMING)/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT3G48560
| PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) ACETOLACTATE SYNTHASE/ PYRUVATE DECARBOXYLASE |
| AT3G01610
| PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G17880
| Predictedtwo hybrid | FSW = 0.0204
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
| AT4G17270
| PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | MO25 FAMILY PROTEIN |
| AT5G57015
| PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G24310
| Predictedtwo hybrid | FSW = 0.0449
| Unknown | UNKNOWN PROTEIN |
| AT3G13445
| PredictedAffinity Capture-MS | FSW = 0.0043
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT2G13540
| Predictedtwo hybrid | FSW = 0.0307
| Unknown | ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING |
| AT5G09250
| Predictedtwo hybrid | FSW = 0.0750
| Unknown | KIWI DNA BINDING / PROTEIN BINDING / TRANSCRIPTION COACTIVATOR |
| AT1G27350 | Predictedtwo hybrid | FSW = 0.0923
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273301) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT2G39240
| Predictedtwo hybrid | FSW = 0.0460
| Unknown | RNA POLYMERASE I TRANSCRIPTION FACTOR/ BINDING |
| AT3G18160
| Predictedtwo hybridtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.1103
| Unknown | PEROXIN-3 FAMILY PROTEIN |
| AT2G22530
| PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | CATALYTIC/ TRANSFERASE |
| AT3G03110
| Predictedtwo hybrid | FSW = 0.0154
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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