Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G17770 - ( ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) cytochrome-b5 reductase )
33 Proteins interacs with AT5G17770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G35450 | Experimentaltwo hybrid | FSW = 0.0123
| Unknown | AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING |
AT5G54500 | PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.1684
| Class C:plasma membrane | FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) FMN BINDING / OXIDOREDUCTASE ACTING ON NADH OR NADPH QUINONE OR SIMILAR COMPOUND AS ACCEPTOR |
AT1G05570 | PredictedAffinity Capture-MS | FSW = 0.0278
| Class C:plasma membrane | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0259
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G05500 | PredictedAffinity Capture-MS | FSW = 0.0649
| Class C:plasma membrane | NTMC2T21 |
AT5G20080 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0370
| Class C:extracellular | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
AT1G01310 | Predictedinterologs mapping | FSW = 0.0261
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G19990 | PredictedPhenotypic Enhancement | FSW = 0.0444
| Class C:extracellular | PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) |
AT3G05710 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0309
| Class C:endoplasmic reticulum | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT2G27490 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0404
| Unknown | ATCOAE ATP BINDING / DEPHOSPHO-COA KINASE |
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0442
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G66190 | PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.1203
| Unknown | FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) NADPH DEHYDROGENASE/ ELECTRON TRANSPORTER TRANSFERRING ELECTRONS WITHIN THE CYCLIC ELECTRON TRANSPORT PATHWAY OF PHOTOSYNTHESIS/ ELECTRON TRANSPORTER TRANSFERRING ELECTRONS WITHIN THE NONCYCLIC ELECTRON TRANSP |
AT1G20020 | PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.0901
| Unknown | FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2) NADPH DEHYDROGENASE/ OXIDOREDUCTASE/ POLY(U) BINDING |
AT1G06470 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0811
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G24520 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0342
| Unknown | ATR1 (ARABIDOPSIS P450 REDUCTASE 1) NADPH-HEMOPROTEIN REDUCTASE |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | H2AXA DNA BINDING |
AT1G20080 | PredictedAffinity Capture-MS | FSW = 0.0695
| Unknown | SYTB |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G26450 | PredictedPhenotypic Suppression | FSW = 0.0234
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G57600 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0529
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G13680 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT3G60245 | PredictedAffinity Capture-MS | FSW = 0.0374
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
AT5G55310 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G10950 | PredictedAffinity Capture-MS | FSW = 0.1081
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AB) |
AT5G55300 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT1G09460 | Predictedinterologs mapping | FSW = 0.0276
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454