Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G18110 - ( NCBP (NOVEL CAP-BINDING PROTEIN) RNA binding / translation initiation factor )

8 Proteins interacs with AT5G18110
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G45140

Experimental

FSW = 0.1113

Unknown

LOX2 (LIPOXYGENASE 2) LIPOXYGENASE
AT5G22290

Experimental

pull down

FSW = 0.0857

Unknown

ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR
AT3G48590

Experimental

pull down

FSW = 0.1381

Unknown

NF-YC1 (NUCLEAR FACTOR Y SUBUNIT C1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G36340

Predicted

Affinity Capture-Western

FSW = 0.0645

Unknown

UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G35620

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2616

Unknown

LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) RNA 7-METHYLGUANOSINE CAP BINDING / RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G10260

Predicted

two hybrid

FSW = 0.0052

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT4G34370

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0527

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT1G29550

Predicted

Phylogenetic profile method

FSW = 0.0383

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454