Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G18620 - ( CHR17 (CHROMATIN REMODELING FACTOR17) ATP binding / DNA binding / DNA-dependent ATPase/ helicase/ hydrolase acting on acid anhydrides in phosphorus-containing anhydrides / nucleic acid binding / nucleosome binding )

51 Proteins interacs with AT5G18620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G22330

Predicted

Affinity Capture-MS

FSW = 0.0468

Class C:

nucleus

RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT5G59690Predicted

Colocalization

Colocalization

FSW = 0.1188

Class C:

nucleus

HISTONE H4
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.0290

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G54280

Predicted

Affinity Capture-MS

FSW = 0.0790

Class C:

nucleus

RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G47620

Predicted

Affinity Capture-MS

FSW = 0.1070

Class C:

nucleus

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G06210

Predicted

Phenotypic Enhancement

FSW = 0.0336

Class C:

nucleus

ELF8 (EARLY FLOWERING 8) BINDING
AT3G06400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1273

Class C:

nucleus

CHR11 (CHROMATIN-REMODELING PROTEIN 11) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT2G24490

Predicted

Phenotypic Suppression

FSW = 0.0626

Class C:

nucleus

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT1G07980

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Co-purification

Reconstituted Complex

Co-purification

Affinity Capture-Western

in vivo

FSW = 0.1270

Class C:

nucleus

NF-YC10 (NUCLEAR FACTOR Y SUBUNIT C10) TRANSCRIPTION FACTOR
AT4G13980

Predicted

biochemical

FSW = 0.0056

Class C:

nucleus

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT5G08630

Predicted

in vivo

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

co-fractionation

Co-fractionation

Co-purification

Reconstituted Complex

Affinity Capture-Western

Co-purification

Affinity Capture-Western

Co-purification

Co-purification

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

co-fractionation

Co-fractionation

Affinity Capture-MS

Phenotypic Enhancement

in vitro

in vivo

Co-expression

FSW = 0.3490

Class C:

nucleus

DDT DOMAIN-CONTAINING PROTEIN
AT2G27470

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0984

Class C:

nucleus

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT2G13370

Predicted

Affinity Capture-MS

synthetic growth defect

synthetic growth defect

Affinity Capture-MS

FSW = 0.1169

Class C:

nucleus

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G15430

Predicted

Phenotypic Suppression

FSW = 0.0399

Class C:

nucleus

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G48430

Predicted

Phenotypic Enhancement

FSW = 0.0672

Class C:

nucleus

REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G37470

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0477

Class C:

nucleus

HISTONE H2B PUTATIVE
AT5G09650

Predicted

Affinity Capture-Western

FSW = 0.0286

Unknown

ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

IMPORTIN BETA-2 PUTATIVE
AT4G35800

Predicted

Phenotypic Enhancement

FSW = 0.0219

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G63110

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.0291

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G58230

Predicted

Co-purification

Affinity Capture-Western

Co-purification

FSW = 0.0759

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0163

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G12350

Predicted

Gene fusion method

FSW = 0.0053

Unknown

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT5G40840

Predicted

in vitro

FSW = 0.0174

Unknown

SYN2
AT5G63860

Predicted

Affinity Capture-MS

FSW = 0.0776

Unknown

UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G22760

Predicted

Reconstituted Complex

co-fractionation

Co-fractionation

Reconstituted Complex

FSW = 0.0613

Unknown

PHD FINGER FAMILY PROTEIN
AT2G27170

Predicted

Co-purification

FSW = 0.0325

Unknown

TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT5G16270

Predicted

Co-purification

FSW = 0.0205

Unknown

SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)
AT1G06790

Predicted

Phenotypic Enhancement

FSW = 0.0159

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G54390

Predicted

Phenotypic Suppression

FSW = 0.0601

Unknown

PHD FINGER PROTEIN-RELATED
AT2G30410

Predicted

Phenotypic Enhancement

FSW = 0.0423

Unknown

KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT3G10070

Predicted

Phenotypic Suppression

FSW = 0.0350

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.0428

Unknown

HDA15 HISTONE DEACETYLASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.0819

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22142

Predicted

Phenotypic Enhancement

FSW = 0.0390

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G46320Predicted

Colocalization

Colocalization

FSW = 0.1083

Unknown

HISTONE H4
AT4G10480

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Phenotypic Enhancement

FSW = 0.0211

Unknown

NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE
AT4G21480

Predicted

Phenotypic Enhancement

FSW = 0.0084

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.0688

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G14530

Predicted

Phenotypic Enhancement

FSW = 0.0134

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G50490

Predicted

Phenotypic Enhancement

FSW = 0.0198

Unknown

UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE
AT4G31985

Predicted

Affinity Capture-MS

FSW = 0.0187

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT5G19300

Predicted

Synthetic Lethality

FSW = 0.0198

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G51940

Predicted

Phenotypic Enhancement

FSW = 0.0497

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G53770

Predicted

synthetic growth defect

FSW = 0.0346

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G59440

Predicted

Synthetic Lethality

FSW = 0.0243

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT5G60040

Predicted

Affinity Capture-MS

FSW = 0.1041

Unknown

NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING
AT5G41880

Predicted

Phenotypic Suppression

FSW = 0.0508

Unknown

POLA3 DNA PRIMASE
AT5G43500

Predicted

Phenotypic Enhancement

FSW = 0.0827

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.0577

Unknown

BINDING
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.0369

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454