Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G18930 - ( BUD2 (BUSHY AND DWARF 2) adenosylmethionine decarboxylase )

5 Proteins interacs with AT5G18930
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G28190

Predicted

Phenotypic Suppression

FSW = 0.0148

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G12050

Predicted

two hybrid

FSW = 0.0483

Unknown

AHA1 DOMAIN-CONTAINING PROTEIN
AT1G18600

Predicted

Phenotypic Enhancement

FSW = 0.1170

Unknown

RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)
AT3G25570

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1303

Unknown

ADENOSYLMETHIONINE DECARBOXYLASE FAMILY PROTEIN
AT3G02470

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3618

Unknown

SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) ADENOSYLMETHIONINE DECARBOXYLASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454