Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19000 - ( ATBPM1 (BTB-POZ and MATH domain 1) protein binding )

28 Proteins interacs with AT5G19000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G23180

Experimental

filter binding

FSW = 0.0573

Unknown

CRK10 (CYSTEINE-RICH RLK10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G78080

Experimental

Reconstituted Complex

two hybrid

FSW = 0.1250

Unknown

RAP24 (RELATED TO AP2 4) DNA BINDING / TRANSCRIPTION FACTOR
AT1G22190

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0566

Unknown

AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR PUTATIVE
AT5G20570

Experimental

pull down

FSW = 0.0329

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT1G26830

Experimental

two hybrid

pull down

two hybrid

Reconstituted Complex

two hybrid

FSW = 0.0633

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G39760

Experimental

FSW = 0.5192

Unknown

BPM3 PROTEIN BINDING
AT4G16360

Experimental

FSW = 0.0225

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT1G69670

Experimental

two hybrid

two hybrid

FSW = 0.1401

Unknown

CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G38770

Predicted

two hybrid

FSW = 0.1607

Unknown

EMB2765 (EMBRYO DEFECTIVE 2765)
AT5G23710

Predicted

two hybrid

FSW = 0.0704

Unknown

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G27770

Predicted

two hybrid

FSW = 0.0664

Unknown

60S RIBOSOMAL PROTEIN L22 (RPL22C)
AT5G41600

Predicted

two hybrid

FSW = 0.0345

Unknown

BTI3 (VIRB2-INTERACTING PROTEIN 3)
AT5G35530

Predicted

two hybrid

FSW = 0.0396

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3C)
AT1G69220

Predicted

two hybrid

FSW = 0.0262

Unknown

SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G44790

Predicted

two hybrid

FSW = 0.0272

Unknown

RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER
AT3G05540

Predicted

two hybrid

FSW = 0.0110

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G06580

Predicted

two hybrid

FSW = 0.0592

Unknown

GALK ATP BINDING / GALACTOKINASE
AT4G29580

Predicted

two hybrid

FSW = 0.0179

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G08560

Predicted

two hybrid

FSW = 0.0592

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G15970

Predicted

two hybrid

FSW = 0.0469

Unknown

RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT5G41770

Predicted

two hybrid

FSW = 0.0350

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G25060

Predicted

two hybrid

FSW = 0.0344

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G66150

Predicted

two hybrid

FSW = 0.0664

Unknown

GLYCOSYL HYDROLASE FAMILY 38 PROTEIN
AT3G56960

Predicted

Affinity Capture-MS

FSW = 0.1032

Unknown

PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
AT5G49310

Predicted

Affinity Capture-MS

FSW = 0.0396

Unknown

IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER
AT5G55760

Predicted

Affinity Capture-MS

FSW = 0.0304

Unknown

SRT1 (SIRTUIN 1) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G37890

Predicted

in vitro

FSW = 0.0315

Unknown

SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE
AT1G71840

Predicted

Gene fusion method

FSW = 0.0625

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454