Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19000 - ( ATBPM1 (BTB-POZ and MATH domain 1) protein binding )
28 Proteins interacs with AT5G19000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G23180 | Experimentalfilter binding | FSW = 0.0573
| Unknown | CRK10 (CYSTEINE-RICH RLK10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G78080 | ExperimentalReconstituted Complextwo hybrid | FSW = 0.1250
| Unknown | RAP24 (RELATED TO AP2 4) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G22190 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0566
| Unknown | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR PUTATIVE |
AT5G20570 | Experimentalpull down | FSW = 0.0329
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT1G26830 | Experimentaltwo hybridpull downtwo hybridReconstituted Complextwo hybrid | FSW = 0.0633
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G39760 | Experimental | FSW = 0.5192
| Unknown | BPM3 PROTEIN BINDING |
AT4G16360 | Experimental | FSW = 0.0225
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT1G69670 | Experimentaltwo hybridtwo hybrid | FSW = 0.1401
| Unknown | CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G38770 | Predictedtwo hybrid | FSW = 0.1607
| Unknown | EMB2765 (EMBRYO DEFECTIVE 2765) |
AT5G23710 | Predictedtwo hybrid | FSW = 0.0704
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G27770 | Predictedtwo hybrid | FSW = 0.0664
| Unknown | 60S RIBOSOMAL PROTEIN L22 (RPL22C) |
AT5G41600 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | BTI3 (VIRB2-INTERACTING PROTEIN 3) |
AT5G35530 | Predictedtwo hybrid | FSW = 0.0396
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT1G69220 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G44790 | Predictedtwo hybrid | FSW = 0.0272
| Unknown | RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G05540 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT3G06580 | Predictedtwo hybrid | FSW = 0.0592
| Unknown | GALK ATP BINDING / GALACTOKINASE |
AT4G29580 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G08560 | Predictedtwo hybrid | FSW = 0.0592
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G15970 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT5G41770 | Predictedtwo hybrid | FSW = 0.0350
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G25060 | Predictedtwo hybrid | FSW = 0.0344
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G66150 | Predictedtwo hybrid | FSW = 0.0664
| Unknown | GLYCOSYL HYDROLASE FAMILY 38 PROTEIN |
AT3G56960 | PredictedAffinity Capture-MS | FSW = 0.1032
| Unknown | PIP5K4 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE 4) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
AT5G49310 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G55760 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | SRT1 (SIRTUIN 1) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G37890 | Predictedin vitro | FSW = 0.0315
| Unknown | SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE |
AT1G71840 | PredictedGene fusion method | FSW = 0.0625
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454