Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19180 - ( ECR1 (E1 C-terminal related 1) NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme )

25 Proteins interacs with AT5G19180
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G05180

Experimental

Statements in papers that a curator cant trace to another publication

FSW = 0.0245

Class D:

cytosol (p = 0.67)

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT2G32410

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

two hybrid

two hybrid

in vivo

Affinity Capture-MS

FSW = 0.2016

Class C:

peroxisome

AXL (AXR1-LIKE) BINDING / CATALYTIC
AT1G18640

Predicted

Phenotypic Enhancement

FSW = 0.2282

Unknown

PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE
AT2G17630

Predicted

Phenotypic Enhancement

FSW = 0.0336

Unknown

PHOSPHOSERINE AMINOTRANSFERASE PUTATIVE
AT5G63110

Predicted

Phenotypic Suppression

FSW = 0.0798

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G26110

Predicted

Phenotypic Enhancement

FSW = 0.0781

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT3G10330

Predicted

interaction prediction

FSW = 0.0305

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G41630

Predicted

two hybrid

FSW = 0.0163

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT2G06210

Predicted

Phenotypic Suppression

FSW = 0.0442

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT2G24490

Predicted

Phenotypic Suppression

FSW = 0.0220

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0717

Unknown

FZF TRANSCRIPTION FACTOR
AT1G28960

Predicted

two hybrid

interaction prediction

FSW = 0.0816

Unknown

ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) HYDROLASE
AT1G11980

Predicted

in vitro

FSW = 0.0955

Unknown

RUB3 (UBIQUITIN-RELATED PROTEIN 3)
AT2G18600

Predicted

Affinity Capture-MS

FSW = 0.1241

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT4G36800

Predicted

Affinity Capture-MS

FSW = 0.0597

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT1G11930

Predicted

Phenotypic Enhancement

FSW = 0.1016

Unknown

ALANINE RACEMASE FAMILY PROTEIN
AT1G59890

Predicted

Phenotypic Suppression

FSW = 0.0667

Unknown

SNL5 (SIN3-LIKE 5)
AT1G64550

Predicted

Phenotypic Enhancement

FSW = 0.0119

Unknown

ATGCN3 TRANSPORTER
AT1G66740

Predicted

Phenotypic Suppression

FSW = 0.0326

Unknown

SGA2
AT1G79730

Predicted

Phenotypic Suppression

FSW = 0.0408

Unknown

ELF7 (EARLY FLOWERING 7)
AT3G54380

Predicted

Phenotypic Suppression

FSW = 0.0899

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G33240

Predicted

Phenotypic Suppression

FSW = 0.0974

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.0603

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G13780

Predicted

Phenotypic Suppression

FSW = 0.0500

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G60620

Predicted

Phenotypic Enhancement

FSW = 0.0222

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454