Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19180 - ( ECR1 (E1 C-terminal related 1) NEDD8 activating enzyme/ protein heterodimerization/ small protein activating enzyme )
25 Proteins interacs with AT5G19180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G05180 | ExperimentalStatements in papers that a curator cant trace to another publication | FSW = 0.0245
| Class D:cytosol (p = 0.67) | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT2G32410 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridtwo hybridtwo hybridin vivoAffinity Capture-MS | FSW = 0.2016
| Class C:peroxisome | AXL (AXR1-LIKE) BINDING / CATALYTIC |
AT1G18640 | PredictedPhenotypic Enhancement | FSW = 0.2282
| Unknown | PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE |
AT2G17630 | PredictedPhenotypic Enhancement | FSW = 0.0336
| Unknown | PHOSPHOSERINE AMINOTRANSFERASE PUTATIVE |
AT5G63110 | PredictedPhenotypic Suppression | FSW = 0.0798
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT4G26110 | PredictedPhenotypic Enhancement | FSW = 0.0781
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0305
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G06210 | PredictedPhenotypic Suppression | FSW = 0.0442
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.0220
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.0717
| Unknown | FZF TRANSCRIPTION FACTOR |
AT1G28960 | Predictedtwo hybridinteraction prediction | FSW = 0.0816
| Unknown | ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) HYDROLASE |
AT1G11980 | Predictedin vitro | FSW = 0.0955
| Unknown | RUB3 (UBIQUITIN-RELATED PROTEIN 3) |
AT2G18600 | PredictedAffinity Capture-MS | FSW = 0.1241
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.0597
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT1G11930 | PredictedPhenotypic Enhancement | FSW = 0.1016
| Unknown | ALANINE RACEMASE FAMILY PROTEIN |
AT1G59890 | PredictedPhenotypic Suppression | FSW = 0.0667
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G64550 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | ATGCN3 TRANSPORTER |
AT1G66740 | PredictedPhenotypic Suppression | FSW = 0.0326
| Unknown | SGA2 |
AT1G79730 | PredictedPhenotypic Suppression | FSW = 0.0408
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.0899
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G33240 | PredictedPhenotypic Suppression | FSW = 0.0974
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.0603
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13780 | PredictedPhenotypic Suppression | FSW = 0.0500
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0222
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454