Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G19280 - ( KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) phosphoprotein phosphatase/ protein kinase binding / protein serine/threonine phosphatase )

15 Proteins interacs with AT5G19280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0320

Class A:

plasma membrane

Class B:

vacuole

peroxisome

nucleus

cytosol

cytoskeleton

Class D:

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G66150

Experimental

filter binding

FSW = 0.1481

Class A:

plasma membrane

Class B:

vacuole

Class D:

unclear (p = 0.09)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

TMK1 (TRANSMEMBRANE KINASE 1) TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT4G39400

Experimental

Affinity Capture-Western

far western blotting

Co-crystal Structure

Co-crystallization

affinity technology

FSW = 0.2646

Class A:

plasma membrane

Class B:

vacuole

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G71830

Experimental

two hybrid

two hybrid

Reconstituted Complex

Affinity Capture-MS

fluorescence acceptor donor pair

fluorescence acceptor donor pair

coimmunoprecipitation

two hybrid

FSW = 0.2165

Class A:

plasma membrane

Class B:

unclear

endoplasmic reticulum

Class D:

plastid (p = 0.78)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT3G09840

Experimental

two hybrid

FSW = 0.0403

Class A:

plasma membrane

Class B:

nucleus

endoplasmic reticulum

cytosol

Class D:

cytosol (p = 0.67)

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT4G33430

Experimental

Co-crystal Structure

far western blotting

Co-crystallization

FSW = 0.2338

Class A:

plasma membrane

Class B:

extracellular

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE
AT4G23180

Experimental

filter binding

FSW = 0.1895

Class A:

plasma membrane

Class D:

mitochondrion (p = 0.82)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

CRK10 (CYSTEINE-RICH RLK10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G46330

Experimental

two hybrid

FSW = 0.2368

Class A:

plasma membrane

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

FLS2 (FLAGELLIN-SENSITIVE 2) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT1G21250

Experimental

co-fractionation

Co-fractionation

FSW = 0.0832

Class B:

vacuole

unclear

plasma membrane

golgi

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

WAK1 (CELL WALL-ASSOCIATED KINASE) KINASE
AT2G05520

Experimental

molecular sieving

Affinity Capture-Western

FSW = 0.0896

Class B:

plasma membrane

peroxisome

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

GRP-3 (GLYCINE-RICH PROTEIN 3)
AT1G01040

Experimental

biochemical

FSW = 0.0287

Class B:

plasma membrane

nucleus

Class D:

cytosol (p = 0.67)

DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT1G75820

Experimental

biochemical

Reconstituted Complex

Reconstituted Complex

filter binding

protein kinase assay

phosphatase assay

far western blotting

Co-crystal Structure

Affinity Capture-Western

biochemical

Co-crystallization

coimmunoprecipitation

FSW = 0.1722

Class D:

unclear (p = 0.09)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

cytosol (p = 0.67)

CLV1 (CLAVATA 1) ATP BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE/ RECEPTOR SIGNALING PROTEIN SERINE/THREONINE KINASE
AT3G57040

Experimental

filter binding

FSW = 0.1184

Unknown

ARR9 (RESPONSE REGULATOR 9) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT1G55250

Experimental

far western blotting

FSW = 0.1111

Unknown

HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT4G23140

Experimental

filter binding

far western blotting

Reconstituted Complex

in vitro

FSW = 0.3200

Unknown

CRK6 (CYSTEINE-RICH RLK 6) KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454