Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19280 - ( KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) phosphoprotein phosphatase/ protein kinase binding / protein serine/threonine phosphatase )
15 Proteins interacs with AT5G19280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0320
| Class A:plasma membraneClass B:vacuoleperoxisomenucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G66150 | Experimentalfilter binding | FSW = 0.1481
| Class A:plasma membraneClass B:vacuoleClass D:unclear (p = 0.09)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | TMK1 (TRANSMEMBRANE KINASE 1) TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT4G39400 | ExperimentalAffinity Capture-Westernfar western blottingCo-crystal StructureCo-crystallizationaffinity technology | FSW = 0.2646
| Class A:plasma membraneClass B:vacuoleClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G71830 | Experimentaltwo hybridtwo hybridReconstituted ComplexAffinity Capture-MSfluorescence acceptor donor pairfluorescence acceptor donor paircoimmunoprecipitationtwo hybrid | FSW = 0.2165
| Class A:plasma membraneClass B:unclearendoplasmic reticulumClass D:plastid (p = 0.78)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT3G09840 | Experimentaltwo hybrid | FSW = 0.0403
| Class A:plasma membraneClass B:nucleusendoplasmic reticulumcytosolClass D:cytosol (p = 0.67) | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT4G33430 | ExperimentalCo-crystal Structurefar western blottingCo-crystallization | FSW = 0.2338
| Class A:plasma membraneClass B:extracellularClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE |
AT4G23180 | Experimentalfilter binding | FSW = 0.1895
| Class A:plasma membraneClass D:mitochondrion (p = 0.82)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46) | CRK10 (CYSTEINE-RICH RLK10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G46330 | Experimentaltwo hybrid | FSW = 0.2368
| Class A:plasma membraneClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | FLS2 (FLAGELLIN-SENSITIVE 2) ATP BINDING / KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT1G21250 | Experimentalco-fractionationCo-fractionation | FSW = 0.0832
| Class B:vacuoleunclearplasma membranegolgiClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46) | WAK1 (CELL WALL-ASSOCIATED KINASE) KINASE |
AT2G05520 | Experimentalmolecular sievingAffinity Capture-Western | FSW = 0.0896
| Class B:plasma membraneperoxisomeClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46) | GRP-3 (GLYCINE-RICH PROTEIN 3) |
AT1G01040 | Experimentalbiochemical | FSW = 0.0287
| Class B:plasma membranenucleusClass D:cytosol (p = 0.67) | DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT1G75820 | ExperimentalbiochemicalReconstituted ComplexReconstituted Complexfilter bindingprotein kinase assayphosphatase assayfar western blottingCo-crystal StructureAffinity Capture-WesternbiochemicalCo-crystallizationcoimmunoprecipitation | FSW = 0.1722
| Class D:unclear (p = 0.09)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | CLV1 (CLAVATA 1) ATP BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE/ RECEPTOR SIGNALING PROTEIN SERINE/THREONINE KINASE |
AT3G57040 | Experimentalfilter binding | FSW = 0.1184
| Unknown | ARR9 (RESPONSE REGULATOR 9) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G55250 | Experimentalfar western blotting | FSW = 0.1111
| Unknown | HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING |
AT4G23140 | Experimentalfilter bindingfar western blottingReconstituted Complexin vitro | FSW = 0.3200
| Unknown | CRK6 (CYSTEINE-RICH RLK 6) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454