Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G19690 - ( STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) oligosaccharyl transferase )

11 Proteins interacs with AT5G19690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01720

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3476

Class C:

plasma membrane

endoplasmic reticulum

RIBOPHORIN I FAMILY PROTEIN
AT5G66680

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Affinity Capture-MS

Co-purification

FSW = 0.1219

Class C:

plasma membrane

endoplasmic reticulum

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G34130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5724

Class C:

plasma membrane

endoplasmic reticulum

STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) OLIGOSACCHARYL TRANSFERASE
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0082

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G39630

Predicted

Synthetic Lethality

FSW = 0.2184

Class C:

endoplasmic reticulum

GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN
AT1G71220

Predicted

Synthetic Lethality

FSW = 0.1426

Class C:

endoplasmic reticulum

EBS1 (EMS-MUTAGENIZED BRI1 SUPPRESSOR 1) UDP-GLUCOSEGLYCOPROTEIN GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT1G32210

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.4828

Class C:

endoplasmic reticulum

ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)
AT2G32850

Predicted

two hybrid

FSW = 0.0623

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G78720

Predicted

two hybrid

FSW = 0.1848

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G47760

Predicted

synthetic growth defect

FSW = 0.1062

Unknown

ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G12670

Predicted

Affinity Capture-MS

FSW = 0.0203

Unknown

EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454