Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19690 - ( STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) oligosaccharyl transferase )
11 Proteins interacs with AT5G19690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01720 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3476
| Class C:plasma membraneendoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
AT5G66680 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purification | FSW = 0.1219
| Class C:plasma membraneendoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G34130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5724
| Class C:plasma membraneendoplasmic reticulum | STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) OLIGOSACCHARYL TRANSFERASE |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0082
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G39630 | PredictedSynthetic Lethality | FSW = 0.2184
| Class C:endoplasmic reticulum | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT1G71220 | PredictedSynthetic Lethality | FSW = 0.1426
| Class C:endoplasmic reticulum | EBS1 (EMS-MUTAGENIZED BRI1 SUPPRESSOR 1) UDP-GLUCOSEGLYCOPROTEIN GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G32210 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.4828
| Class C:endoplasmic reticulum | ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) |
AT2G32850 | Predictedtwo hybrid | FSW = 0.0623
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G78720 | Predictedtwo hybrid | FSW = 0.1848
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G47760 | Predictedsynthetic growth defect | FSW = 0.1062
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G12670 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454