Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19740 - ( peptidase M28 family protein )

16 Proteins interacs with AT5G19740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67630

Predicted

Phenotypic Enhancement

FSW = 0.0372

Unknown

DNA HELICASE PUTATIVE
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1516

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0489

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.0334

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G25980

Predicted

Phenotypic Enhancement

FSW = 0.0674

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.1021

Unknown

NUCLEOTIDE BINDING
AT2G28390

Predicted

Phenotypic Enhancement

FSW = 0.0896

Unknown

SAND FAMILY PROTEIN
AT3G10070

Predicted

Phenotypic Enhancement

FSW = 0.0860

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G22480

Predicted

Phenotypic Enhancement

FSW = 0.1101

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.1370

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Phenotypic Enhancement

FSW = 0.1182

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.0797

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G48640

Predicted

Phenotypic Suppression

FSW = 0.0492

Unknown

CYCLIN FAMILY PROTEIN
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.1119

Unknown

BINDING
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.1351

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G65180

Predicted

Phenotypic Enhancement

FSW = 0.1896

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454