Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19740 - ( peptidase M28 family protein )
16 Proteins interacs with AT5G19740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67630 | PredictedPhenotypic Enhancement | FSW = 0.0372
| Unknown | DNA HELICASE PUTATIVE |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.1516
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0489
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0334
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G25980 | PredictedPhenotypic Enhancement | FSW = 0.0674
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.1021
| Unknown | NUCLEOTIDE BINDING |
AT2G28390 | PredictedPhenotypic Enhancement | FSW = 0.0896
| Unknown | SAND FAMILY PROTEIN |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0860
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G22480 | PredictedPhenotypic Enhancement | FSW = 0.1101
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G08780 | PredictedPhenotypic Enhancement | FSW = 0.1370
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedPhenotypic Enhancement | FSW = 0.1182
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0797
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G48640 | PredictedPhenotypic Suppression | FSW = 0.0492
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.1119
| Unknown | BINDING |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.1351
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G65180 | PredictedPhenotypic Enhancement | FSW = 0.1896
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454