Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20000 - ( 26S proteasome AAA-ATPase subunit putative )
38 Proteins interacs with AT5G20000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.1407
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0043
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G18165 | Predictedtwo hybrid | FSW = 0.0451
| Unknown | MOS4 (MODIFIER OF SNC14) |
AT5G08740 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | NDC1 (NAD(P)H DEHYDROGENASE C1) NADH DEHYDROGENASE |
AT3G19170 | Predictedinterologs mapping | FSW = 0.0330
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT1G45000 | PredictedPhylogenetic profile method | FSW = 0.2407
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT5G19990 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.2227
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT1G53750 | PredictedPhylogenetic profile method | FSW = 0.1250
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G20140 | PredictedPhylogenetic profile method | FSW = 0.2092
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.2276
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedPhylogenetic profile method | FSW = 0.2259
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT5G48545 | PredictedPhenotypic Enhancement | FSW = 0.0504
| Unknown | HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN |
AT5G41370 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0091
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT3G05530 | Predictedin vivoin vitroPhylogenetic profile method | FSW = 0.2425
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G33520 | Predictedtwo hybrid | FSW = 0.0532
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G25210 | Predictedinterologs mapping | FSW = 0.0827
| Unknown | TRANSCRIPTION REGULATOR |
AT1G80830 | Predictedinterologs mapping | FSW = 0.0217
| Unknown | NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT5G57450 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G58290 | Predictedtwo hybridAffinity Capture-MSGene neighbors methodPhylogenetic profile method | FSW = 0.1681
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G61010 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT2G42330 | Predictedtwo hybrid | FSW = 0.0779
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT3G61710 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | AUTOPHAGY PROTEIN APG6 FAMILY |
AT4G32560 | Predictedtwo hybridtwo hybrid | FSW = 0.0976
| Unknown | PARAMYOSIN-RELATED |
AT3G17205 | PredictedAffinity Capture-Western | FSW = 0.0779
| Unknown | UPL6 (UBIQUITIN PROTEIN LIGASE 6) UBIQUITIN-PROTEIN LIGASE |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G54560 | PredictedAffinity Capture-MSbiochemicalReconstituted ComplexColocalization | FSW = 0.0110
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G70290 | PredictedReconstituted Complex | FSW = 0.0325
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G47090 | PredictedbiochemicalbiochemicalAffinity Capture-MStwo hybridAffinity Capture-Westernbiochemicalinterologs mapping | FSW = 0.0242
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G22590 | PredictedAffinity Capture-MS | FSW = 0.0026
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT2G03160 | Predictedinterologs mapping | FSW = 0.0186
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G46970 | Predictedtwo hybrid | FSW = 0.0780
| Unknown | PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1) TRANSCRIPTION FACTOR |
AT5G43010 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2131
| Unknown | RPT4A ATPASE |
AT1G53780 | PredictedPhylogenetic profile method | FSW = 0.3793
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G29040 | PredictedPhylogenetic profile method | FSW = 0.2550
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT5G49200 | PredictedGene fusion method | FSW = 0.1894
| Unknown | WD-40 REPEAT FAMILY PROTEIN / ZFWD4 PROTEIN (ZFWD4) |
AT1G17370 | PredictedGene fusion method | FSW = 0.0784
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
AT3G59510 | PredictedGene fusion method | FSW = 0.1268
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454