Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20010 - ( RAN-1 GTP binding / GTPase/ protein binding )
60 Proteins interacs with AT5G20010| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G27970
   | Experimentaltwo hybrid | FSW = 0.0657
| Class A:plasma membranenucleusClass B:peroxisomeClass D:cytosol (p = 0.67) | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT1G27310
| Experimentaltwo hybrid | FSW = 0.0631
| Class A:nucleusClass B:plasma membraneperoxisomecytosolClass D:cytosol (p = 0.67) | NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT5G58590
| Experimentaltwo hybrid | FSW = 0.1546
| Class A:nucleusClass B:plasma membraneperoxisomeClass D:cytosol (p = 0.67) | RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING |
| AT2G30060
| Experimentaltwo hybrid | FSW = 0.1231
| Unknown | RAN-BINDING PROTEIN 1B (RANBP1B) |
| AT1G07140
| Experimentaltwo hybridAffinity Capture-Western | FSW = 0.1546
| Unknown | SIRANBP RAN GTPASE BINDING |
| AT3G05040
| Experimentaltwo hybrid | FSW = 0.0281
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
| AT3G49910
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2739
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G36160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4385
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
| AT2G31610
| PredictedAffinity Capture-MS | FSW = 0.0069
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
| AT3G12580
| PredictedAffinity Capture-MS | FSW = 0.2653
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT5G47520
| PredictedGene fusion method | FSW = 0.0214
| Class C:plasma membrane | ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING |
| AT1G18540
| PredictedAffinity Capture-MS | FSW = 0.5054
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT3G22890
| Predictedsynthetic growth defect | FSW = 0.0080
| Class C:plasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
| AT1G16030
| PredictedAffinity Capture-MS | FSW = 0.0135
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
| AT3G61430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4253
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
| AT1G63290
| PredictedAffinity Capture-MS | FSW = 0.5795
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
| AT1G20760
| PredictedAffinity Capture-MS | FSW = 0.4137
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT4G35310
| PredictedAffinity Capture-MS | FSW = 0.5072
| Class C:plasma membrane | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G24400
| PredictedAffinity Capture-MS | FSW = 0.3160
| Class C:peroxisome | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
| AT2G22780
| PredictedAffinity Capture-MS | FSW = 0.1565
| Class C:peroxisome | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT5G20020
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.1025
| Class C:nucleus | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT1G74060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2630
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT4G26600
| PredictedAffinity Capture-MS | FSW = 0.1980
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT2G23460
| PredictedAffinity Capture-MS | FSW = 0.3022
| Class C:nucleus | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
| AT1G72560
| Predictedtwo hybrid | FSW = 0.0374
| Class C:nucleus | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
| AT3G13080
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2148
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0196
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G20390
| PredictedAffinity Capture-MS | FSW = 0.4235
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
| AT2G31170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3961
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G21640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4592
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
| AT3G19160
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3112
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
| AT2G18450
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4139
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.2595
| Unknown | PSF2 |
| AT5G63860
| PredictedAffinity Capture-MSinterologs mappingEnriched domain pair | FSW = 0.0534
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT1G54290
| PredictedAffinity Capture-MS | FSW = 0.2959
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT2G37540
| PredictedAffinity Capture-MS | FSW = 0.4547
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT3G47940
| PredictedAffinity Capture-MS | FSW = 0.2660
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT4G16440
| PredictedAffinity Capture-MS | FSW = 0.1153
| Unknown | FERREDOXIN HYDROGENASE |
| AT4G36800
| PredictedAffinity Capture-MS | FSW = 0.5651
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
| AT5G06420
| PredictedAffinity Capture-MS | FSW = 0.4004
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT2G03040
| PredictedAffinity Capture-MS | FSW = 0.3863
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
| AT2G16090
| PredictedAffinity Capture-MS | FSW = 0.5505
| Unknown | ZINC FINGER PROTEIN-RELATED |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.2582
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.2202
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G25900
| PredictedSynthetic Lethality | FSW = 0.0128
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
| AT4G11330
| PredictedAffinity Capture-MS | FSW = 0.2422
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT5G16750
| PredictedAffinity Capture-MS | FSW = 0.3337
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G37850
| PredictedAffinity Capture-MS | FSW = 0.4928
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
| AT5G46150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3854
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G67380
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2065
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT5G54200
| PredictedAffinity Capture-MS | FSW = 0.3753
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT4G27640
| PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.0272
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
| AT3G06000
| PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT2G16950
| PredictedAffinity Capture-MSEnriched domain pair | FSW = 0.0367
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
| AT1G69680
| Predictedtwo hybrid | FSW = 0.1546
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK) |
| AT3G04680
| Predictedtwo hybrid | FSW = 0.0379
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
| AT4G21540
| Predictedtwo hybrid | FSW = 0.0256
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
| AT5G55190
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2634
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT5G55080
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0399
| Unknown | ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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