Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20060 - ( phospholipase/carboxylesterase family protein )
49 Proteins interacs with AT5G20060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.1833
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.1687
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0053
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.4054
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.1145
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.4344
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0787
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.2747
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.4705
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT2G27500 | PredictedAffinity Capture-MS | FSW = 0.0494
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4686
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT2G39480 | PredictedSynthetic RescueDosage Growth Defect | FSW = 0.0106
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.1566
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT1G72330 | Predictedtwo hybrid | FSW = 0.0929
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0728
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.4903
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.2826
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G47720 | PredictedAffinity Capture-MS | FSW = 0.1044
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3464
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G27395 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT5G10220 | Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0134
| Unknown | ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.3086
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.5678
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0079
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.5393
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G18170 | PredictedPhenotypic Enhancement | FSW = 0.0243
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.3796
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.3019
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.4687
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.2747
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4021
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.5293
| Unknown | HISTONE H4 |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4267
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.2284
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.4137
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0478
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.4127
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G45080 | PredictedAffinity Capture-MS | FSW = 0.3742
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3348
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.2839
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G22320 | PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.4943
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3332
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.3294
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.4037
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G24670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0688
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4730
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT3G15650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0373
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT1G52700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0367
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454