Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20160 - ( ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

20 Proteins interacs with AT5G20160
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08180

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0610

Class C:

nucleus

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT4G22380

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1707

Class C:

nucleus

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G72440

Predicted

interaction prediction

Co-expression

FSW = 0.0264

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT1G20580

Predicted

interaction prediction

Co-expression

FSW = 0.0120

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0094

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G25780

Predicted

two hybrid

FSW = 0.0112

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT3G20390

Predicted

Affinity Capture-MS

FSW = 0.0094

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT5G12350

Predicted

Affinity Capture-MS

FSW = 0.0652

Unknown

RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT5G66130

Predicted

in vivo

two hybrid

Affinity Capture-MS

FSW = 0.0278

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT2G20635Predicted

two hybrid

FSW = 0.0205

Unknown

ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G49010

Predicted

two hybrid

FSW = 0.0385

Unknown

SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)
AT2G16710

Predicted

Synthetic Lethality

FSW = 0.0577

Unknown

HESB-LIKE DOMAIN-CONTAINING PROTEIN
AT5G11920

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.1672

Unknown

ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE
AT1G02100

Predicted

synthetic growth defect

FSW = 0.0556

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G14310

Predicted

Affinity Capture-MS

FSW = 0.0217

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0050

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G61960

Predicted

two hybrid

FSW = 0.0994

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G02560

Predicted

Affinity Capture-MS

FSW = 0.0557

Unknown

HTA12 DNA BINDING
AT5G67510

Predicted

interologs mapping

FSW = 0.2024

Unknown

60S RIBOSOMAL PROTEIN L26 (RPL26B)
AT4G12600

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1326

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454