Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20160 - ( ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )
20 Proteins interacs with AT5G20160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G08180 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0610
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT4G22380 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1707
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G72440 | Predictedinteraction predictionCo-expression | FSW = 0.0264
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT1G20580 | Predictedinteraction predictionCo-expression | FSW = 0.0120
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0094
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G25780 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0652
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT5G66130 | Predictedin vivotwo hybridAffinity Capture-MS | FSW = 0.0278
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT2G20635 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G49010 | Predictedtwo hybrid | FSW = 0.0385
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT2G16710 | PredictedSynthetic Lethality | FSW = 0.0577
| Unknown | HESB-LIKE DOMAIN-CONTAINING PROTEIN |
AT5G11920 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1672
| Unknown | ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE |
AT1G02100 | Predictedsynthetic growth defect | FSW = 0.0556
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G14310 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G61960 | Predictedtwo hybrid | FSW = 0.0994
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | HTA12 DNA BINDING |
AT5G67510 | Predictedinterologs mapping | FSW = 0.2024
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26B) |
AT4G12600 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1326
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454