Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20720 - ( CPN20 (CHAPERONIN 20) calmodulin binding )

11 Proteins interacs with AT5G20720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

electron microscopy

FSW = 0.0414

Class C:

plastid

mitochondrion

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT1G62750

Predicted

pull down

FSW = 0.0972

Class C:

plastid

mitochondrion

SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT1G55490

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.2222

Class C:

plastid

CPN60B (CHAPERONIN 60 BETA) ATP BINDING / PROTEIN BINDING
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0923

Class C:

plastid

ATHM1 ENZYME ACTIVATOR
AT5G24020

Predicted

pull down

FSW = 0.0556

Class C:

plastid

MIND ATPASE/ CALCIUM-DEPENDENT ATPASE/ PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT5G55220

Predicted

pull down

FSW = 0.1730

Class C:

plastid

TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT2G44650

Predicted

Shared biological function

Co-expression

FSW = 0.0933

Class C:

plastid

CHL-CPN10 (CHLOROPLAST CHAPERONIN 10) CHAPERONE BINDING
ATCG00160Predicted

pull down

FSW = 0.0684

Class C:

plastid

CHLOROPLAST RIBOSOMAL PROTEIN S2
AT4G37910

Predicted

pull down

FSW = 0.0427

Class C:

mitochondrion

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT5G52640

Predicted

pull down

FSW = 0.0111

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G64670

Predicted

pull down

FSW = 0.0201

Unknown

RIBOSOMAL PROTEIN L15 FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454