Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20720 - ( CPN20 (CHAPERONIN 20) calmodulin binding )
11 Proteins interacs with AT5G20720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedelectron microscopy | FSW = 0.0414
| Class C:plastidmitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT1G62750 | Predictedpull down | FSW = 0.0972
| Class C:plastidmitochondrion | SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT1G55490 | PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.2222
| Class C:plastid | CPN60B (CHAPERONIN 60 BETA) ATP BINDING / PROTEIN BINDING |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0923
| Class C:plastid | ATHM1 ENZYME ACTIVATOR |
AT5G24020 | Predictedpull down | FSW = 0.0556
| Class C:plastid | MIND ATPASE/ CALCIUM-DEPENDENT ATPASE/ PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT5G55220 | Predictedpull down | FSW = 0.1730
| Class C:plastid | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
AT2G44650 | PredictedShared biological functionCo-expression | FSW = 0.0933
| Class C:plastid | CHL-CPN10 (CHLOROPLAST CHAPERONIN 10) CHAPERONE BINDING |
ATCG00160 | Predictedpull down | FSW = 0.0684
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT4G37910 | Predictedpull down | FSW = 0.0427
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT5G52640 | Predictedpull down | FSW = 0.0111
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G64670 | Predictedpull down | FSW = 0.0201
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454