Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G21170 - ( 5-AMP-activated protein kinase beta-2 subunit putative )
44 Proteins interacs with AT5G21170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G46340 | Experimental | FSW = 0.0126
| Unknown | SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT3G29160 | Experimentaltwo hybrid | FSW = 0.1795
| Unknown | AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) PROTEIN BINDING / PROTEIN KINASE |
AT3G48530 | Experimentaltwo hybrid | FSW = 0.0678
| Unknown | KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) |
AT4G16360 | Experimental | FSW = 0.2419
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT1G09020 | Experimentaltwo hybridReconstituted Complexin vitro | FSW = 0.0833
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
YGL115W | Experimentaltwo hybrid | FSW = 0.0982
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
YDR477W | Experimentaltwo hybrid | FSW = 0.1451
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT2G36530 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT5G50850 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G23340 | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | CKL10 (CASEIN KINASE I-LIKE 10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G03290 | Predictedinteraction prediction | FSW = 0.0085
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G16630 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | RAD4 DAMAGED DNA BINDING |
AT5G24490 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | 30S RIBOSOMAL PROTEIN PUTATIVE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G49460 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) ATP CITRATE SYNTHASE |
AT5G22770 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G54280 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | CHC1 |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G42270 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE PUTATIVE |
AT4G13780 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
AT3G20050 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT2G45790 | Predictedinteraction prediction | FSW = 0.0268
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
AT5G08420 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | RNA BINDING |
AT5G43850 | Predictedtwo hybrid | FSW = 0.0224
| Unknown | ARD4 ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT1G07880 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G61010 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT3G01090 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.0686
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G07070 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G27040 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G49980 | PredictedAffinity Capture-MS | FSW = 0.0606
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G53880 | PredictedCo-purification | FSW = 0.0074
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0279
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G60550 | PredictedAffinity Capture-MSsynthetic growth defectAffinity Capture-MS | FSW = 0.0455
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT1G30825 | Predictedinteraction prediction | FSW = 0.0408
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454