Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22030 - ( UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) ubiquitin thiolesterase/ ubiquitin-specific protease )

10 Proteins interacs with AT5G22030
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0052

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G02500

Predicted

Phenotypic Enhancement

FSW = 0.0824

Unknown

SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT3G48930

Predicted

biochemical

FSW = 0.0211

Unknown

EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G29960

Predicted

Phenotypic Enhancement

FSW = 0.1390

Unknown

PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G57120

Predicted

in vivo

FSW = 0.0529

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN NUCLEOLUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF (INTERPROIPR006594) SRP40 C-TERMINAL (INTERPROIPR007718) HAS 90949 BLAST HITS TO 45608 PROTEINS IN 1620 SPECIES ARCHAE - 300 BACTERIA - 8281 METAZOA - 37603 FUNGI - 8095 PLANTS - 3374 VIRUSES - 548 OTHER EUKARYOTES - 32748 (SOURCE NCBI BLINK)
AT3G12280

Predicted

in vitro

in vivo

FSW = 0.0038

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G59140

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0456

Unknown

SKP1 FAMILY PROTEIN
AT3G47120

Predicted

Affinity Capture-MS

FSW = 0.0193

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G66640

Predicted

biochemical

FSW = 0.0131

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT5G06540

Predicted

Gene fusion method

FSW = 0.0745

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454