Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22220 - ( E2F1 DNA binding / protein binding / transcription factor )
52 Proteins interacs with AT5G22220| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G78300
   | Experimentalinteraction detection method | FSW = 0.0163
| Class A:nucleusClass B:vacuoleplasma membraneperoxisomecytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G03415
| Experimentalprotein complementation assaytwo hybrid | FSW = 0.1939
| Class A:nucleusClass D:nucleus (p = 0.78) | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
| AT5G02470
| Experimentalpull downprotein complementation assaytwo hybridcoimmunoprecipitation | FSW = 0.2769
| Class A:nucleusClass D:nucleus (p = 0.78) | DPA TRANSCRIPTION FACTOR |
| AT5G23880
| Experimental | FSW = 0.0303
| Class D:cytosol (p = 0.67) | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
| AT3G12280
| Experimentalpull downprotein complementation assaycoimmunoprecipitation | FSW = 0.0390
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT1G30460
| Experimental | FSW = 0.0230
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
| AT2G30360
| Experimental | FSW = 0.0535
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
| AT5G11300
| Experimentaltwo hybrid | FSW = 0.1672
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G07698
| PredictedPhenotypic Suppression | FSW = 0.0401
| Class C:nucleus | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
| AT3G48750
| Predictedin vivoPhenotypic SuppressionPhenotypic Suppressionin vivo | FSW = 0.0225
| Class C:nucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT5G57015
| PredictedPhenotypic Enhancement | FSW = 0.0066
| Class C:nucleus | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G53180
| Predictedtwo hybrid | FSW = 0.0535
| Class C:nucleus | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G13920
| PredictedPhenotypic Suppression | FSW = 0.0281
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT4G34430
| PredictedPhenotypic Enhancement | FSW = 0.0113
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT2G27470
| PredictedPhenotypic Enhancement | FSW = 0.0062
| Class C:nucleus | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
| AT5G11510
| PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.1109
| Class C:nucleus | MYB3R-4 (MYB DOMAIN PROTEIN 3R-4) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT5G04240
| Predictedin vitroin vivotwo hybridAffinity Capture-MS | FSW = 0.0323
| Class C:nucleus | ELF6 (EARLY FLOWERING 6) TRANSCRIPTION FACTOR |
| AT5G35530
| Predictedtwo hybrid | FSW = 0.0062
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
| AT5G17020
| Predictedin vitroin vivo | FSW = 0.0189
| Class C:nucleus | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
| AT1G36340
| PredictedPhenotypic Enhancement | FSW = 0.0094
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
| AT4G38350 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | HEDGEHOG RECEPTOR |
| AT3G15000
| PredictedPhenotypic Enhancement | FSW = 0.0208
| Unknown | LOCATED IN MITOCHONDRION EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PLASTID DEVELOPMENTAL PROTEIN DAG PUTATIVE (TAIRAT3G067902) HAS 50779 BLAST HITS TO 24732 PROTEINS IN 941 SPECIES ARCHAE - 10 BACTERIA - 4862 METAZOA - 25623 FUNGI - 7071 PLANTS - 6957 VIRUSES - 900 OTHER EUKARYOTES - 5356 (SOURCE NCBI BLINK) |
| AT4G35090
| Predictedtwo hybrid | FSW = 0.0184
| Unknown | CAT2 (CATALASE 2) CATALASE |
| AT2G27290
| Predictedtwo hybrid | FSW = 0.0958
| Unknown | UNKNOWN PROTEIN |
| AT3G55200 | Predictedtwo hybrid | FSW = 0.0332
| Unknown | SPLICING FACTOR PUTATIVE |
| AT3G52150
| Predictedtwo hybrid | FSW = 0.0073
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G38740
| Predictedtwo hybrid | FSW = 0.0201
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT5G13300
| Predictedtwo hybrid | FSW = 0.0312
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
| AT5G15680
| Predictedtwo hybrid | FSW = 0.0321
| Unknown | BINDING |
| AT5G46630
| Predictedtwo hybrid | FSW = 0.0139
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT4G31180
| PredictedPhenotypic Suppression | FSW = 0.0247
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
| AT5G28060
| Predictedtwo hybrid | FSW = 0.0062
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
| AT5G12020
| Predictedtwo hybrid | FSW = 0.0153
| Unknown | HSP176II (176 KDA CLASS II HEAT SHOCK PROTEIN) |
| AT2G26210
| PredictedPhenotypic Enhancement | FSW = 0.0247
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT4G36080 | PredictedPhenotypic Enhancement | FSW = 0.0179
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
| AT5G09740
| PredictedPhenotypic Enhancement | FSW = 0.0117
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G62310
| PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | IRE (INCOMPLETE ROOT HAIR ELONGATION) KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G16590
| Predictedtwo hybrid | FSW = 0.0663
| Unknown | REV7 DNA BINDING |
| AT1G68200
| Predictedtwo hybrid | FSW = 0.0108
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
| AT2G44420
| Predictedtwo hybrid | FSW = 0.0561
| Unknown | PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN |
| AT2G46280
| Predictedtwo hybrid | FSW = 0.0042
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G57490
| Predictedtwo hybrid | FSW = 0.0153
| Unknown | 40S RIBOSOMAL PROTEIN S2 (RPS2D) |
| AT4G11330
| PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT4G29020
| Predictedtwo hybrid | FSW = 0.0488
| Unknown | GLYCINE-RICH PROTEIN |
| AT5G16040
| Predictedtwo hybrid | FSW = 0.0153
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT5G55130
| Predictedtwo hybrid | FSW = 0.0165
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
| AT5G67320
| PredictedPhenotypic Enhancement | FSW = 0.0321
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
| AT5G45190
| Predictedtwo hybrid | FSW = 0.1266
| Unknown | CYCLIN FAMILY PROTEIN |
| AT5G56580
| Predictedtwo hybrid | FSW = 0.0281
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
| AT5G67540
| Predictedtwo hybrid | FSW = 0.0045
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT3G54180
| Predictedin vivoin vivo | FSW = 0.0879
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
| AT3G59060
| Predictedin vitroin vivotwo hybrid | FSW = 0.0264
| Unknown | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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