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AT5G22290 - ( anac089 (Arabidopsis NAC domain containing protein 89) transcription factor )

31 Proteins interacs with AT5G22290

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G35620	Experimental pull down	FSW = 0.0643	Class A: nucleus cytosol Class D: cytosol (p = 0.67)	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) RNA 7-METHYLGUANOSINE CAP BINDING / RNA BINDING / TRANSLATION INITIATION FACTOR
AT3G54010	Experimental pull down confocal microscopy	FSW = 0.0941	Class A: nucleus cytosol Class D: cytosol (p = 0.67)	PAS1 (PASTICCINO 1) FK506 BINDING / BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G02500	Experimental pull down	FSW = 0.0214	Class A: nucleus Class B: vacuole plastid plasma membrane peroxisome cytosol Class D: cytosol (p = 0.67)	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT4G39260	Experimental pull down	FSW = 0.0588	Class A: nucleus Class B: plastid plasma membrane peroxisome cytosol Class D: nucleus (p = 0.78)	GR-RBP8 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G58510	Experimental pull down	FSW = 0.0370	Class A: nucleus Class B: plasma membrane peroxisome cytosol Class D: nucleus (p = 0.78)	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G48930	Experimental pull down	FSW = 0.0094	Class A: nucleus Class B: plasma membrane cytosol Class D: cytosol (p = 0.67)	EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G22330	Experimental pull down	FSW = 0.0941	Class A: nucleus Class B: mitochondrion cytosol	PMH2 (PUTATIVE MITOCHONDRIAL RNA HELICASE 2) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G33410	Experimental pull down	FSW = 0.0672	Class A: nucleus Class B: cytosol Class D: nucleus (p = 0.78)	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT5G44200	Experimental pull down	FSW = 0.0541	Class A: nucleus Class B: cytosol Class D: nucleus (p = 0.78)	CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT4G18040	Experimental pull down	FSW = 0.0491	Class A: nucleus Class B: cytosol Class D: cytosol (p = 0.67)	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT2G13540	Experimental pull down	FSW = 0.1722	Class A: nucleus Class B: cytosol Class D: cytosol (p = 0.67)	ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING
AT1G27090	Experimental pull down	FSW = 0.1176	Class A: cytosol Class B: unclear nucleus Class D: nucleus (p = 0.78)	GLYCINE-RICH PROTEIN
AT4G37910	Experimental pull down	FSW = 0.0036	Class B: vacuole nucleus mitochondrion cytosol	MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT2G39780	Experimental pull down	FSW = 0.1176	Class B: vacuole nucleus cytosol	RNS2 (RIBONUCLEASE 2) RNA BINDING / ENDORIBONUCLEASE/ RIBONUCLEASE T2
AT5G57870	Experimental pull down	FSW = 0.0573	Class B: unclear nucleus cytosol Class D: nucleus (p = 0.78)	EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT1G16030	Experimental pull down	FSW = 0.0094	Class B: plastid plasma membrane nucleus cytosol Class D: cytosol (p = 0.67)	HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT5G58470	Experimental pull down	FSW = 0.0248	Class B: plastid nucleus cytosol Class D: nucleus (p = 0.78)	TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT4G38680	Experimental pull down	FSW = 0.0090	Class B: plasma membrane nucleus cytosol Class D: nucleus (p = 0.78)	GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT2G42520	Experimental pull down	FSW = 0.0404	Class B: peroxisome nucleus cytosol Class D: cytosol (p = 0.67)	DEAD BOX RNA HELICASE PUTATIVE
AT2G41800	Experimental pull down	FSW = 0.0941	Class B: nucleus extracellular cytosol	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELL WALL PLANT-TYPE CELL WALL EXPRESSED IN 7 PLANT STRUCTURES EXPRESSED DURING 4 ANTHESIS C GLOBULAR STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF642 (INTERPROIPR006946) GALACTOSE-BINDING LIKE (INTERPROIPR008979) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G418101) HAS 156 BLAST HITS TO 155 PROTEINS IN 11 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 156 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK)
AT5G18110	Experimental pull down	FSW = 0.0857	Unknown	NCBP (NOVEL CAP-BINDING PROTEIN) RNA BINDING / TRANSLATION INITIATION FACTOR
AT3G26400	Experimental pull down	FSW = 0.0941	Unknown	EIF4B1 TRANSLATION INITIATION FACTOR
AT3G06480	Experimental pull down	FSW = 0.1176	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT3G60240	Experimental pull down	FSW = 0.0449	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT2G35340	Experimental pull down	FSW = 0.0941	Unknown	MEE29 (MATERNAL EFFECT EMBRYO ARREST 29) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT2G24050	Experimental pull down	FSW = 0.0711	Unknown	MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT1G62410	Experimental pull down	FSW = 0.1176	Unknown	MIF4G DOMAIN-CONTAINING PROTEIN
AT4G01290	Experimental pull down	FSW = 0.1176	Unknown	UNKNOWN PROTEIN
AT5G42950	Experimental pull down	FSW = 0.0336	Unknown	GYF DOMAIN-CONTAINING PROTEIN
AT1G10270	Experimental pull down	FSW = 0.0941	Unknown	GRP23 (GLUTAMINE-RICH PROTEIN23) BINDING
AT3G58570	Experimental pull down	FSW = 0.0672	Unknown	DEAD BOX RNA HELICASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G22290 - ( anac089 (Arabidopsis NAC domain containing protein 89) transcription factor )

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Fasta sequences:

Quick help

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How to cite